Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RPL23AP59-201ENST00000399415 461 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AL049697.2-201ENST00000403708 294 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 MAST4-207ENST00000407621 559 ntTSL 2 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AC073264.1-201ENST00000411508 416 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 RPS20P14-201ENST00000412545 360 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 MTATP6P19-201ENST00000413797 659 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 RBMY1KP-201ENST00000423480 476 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 MTND2P11-201ENST00000423638 648 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 RPS12P10-201ENST00000427031 377 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 YY1P1-201ENST00000427625 668 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 VN1R17P-201ENST00000472048 1090 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 RPL7P47-201ENST00000497299 556 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 UBE2CP3-201ENST00000502715 450 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 HPRT1P2-201ENST00000505250 544 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 PRELID3BP5-201ENST00000508612 460 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 PARP1P2-201ENST00000556806 195 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AC105129.1-201ENST00000560250 297 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AC012182.1-201ENST00000570133 895 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AL356218.2-201ENST00000605264 187 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AC110741.2-201ENST00000605278 268 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 AC107308.1-201ENST00000615897 301 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 ZNF37BP-203ENST00000452306 1352 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 RNU6-600P-201ENST00000362524 99 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 SNORA70.2-201ENST00000364506 135 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 MIR129-1-201ENST00000384972 72 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 SDHCP2-201ENST00000398565 501 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 SSXP10-201ENST00000402595 565 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 ZNF603P-201ENST00000405613 487 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 RNU2-71P-201ENST00000411395 189 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AP001324.1-201ENST00000428553 399 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 RPL21P110-201ENST00000433345 446 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC091390.1-201ENST00000433904 331 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 ZFAND6P1-201ENST00000434138 605 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 YWHAZP8-201ENST00000436935 731 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 ELOCP13-201ENST00000443934 329 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 BX248409.1-201ENST00000455497 255 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AL133477.1-201ENST00000457472 514 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 SYPL1P1-201ENST00000473622 768 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 RPL12P20-201ENST00000475538 479 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC015724.1-201ENST00000478577 156 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC068587.1-201ENST00000483613 781 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC093840.1-201ENST00000511599 336 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AF279873.1-201ENST00000523393 313 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 MIR4715-201ENST00000584117 79 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 OR4G1P-201ENST00000588632 938 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 VN1R88P-201ENST00000596787 292 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC040174.2-201ENST00000602701 465 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AC008785.1-201ENST00000624475 456 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AF001550.2-201ENST00000636643 217 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 OR56B2P-202ENST00000641377 2453 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 AP001486.2-201ENST00000561652 5113 ntBASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
ZNF540Q8NDQ6 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AC010928.1-201ENST00000592477 1447 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms