Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC119744.1-201ENST00000454746 1715 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC000123.3-201ENST00000624029 4975 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC118273.1-201ENST00000525324 3006 ntBASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 LIPT1P1-201ENST00000415870 1186 ntBASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 BX842559.1-201ENST00000419615 532 ntBASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 RPL23AP82-202ENST00000427528 469 ntBASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 CENPBD1P1-201ENST00000464061 469 ntBASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 RPS3AP50-201ENST00000487064 803 ntBASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 OR1AB1P-201ENST00000585564 761 ntBASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 AC024341.1-201ENST00000526444 1552 ntBASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 ZNF807-201ENST00000328088 1707 ntBASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC88AQ3V6T2 RNA5SP322-201ENST00000363617 119 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 HIGD1AP12-201ENST00000427832 281 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 SCN1A-220ENST00000641603 12506 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 U3.19-201ENST00000390893 196 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 RN7SKP284-201ENST00000411002 343 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 MOB1AP1-201ENST00000430903 535 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AL513175.1-201ENST00000431492 780 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AC097262.1-201ENST00000452559 548 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AC011825.1-201ENST00000484967 388 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 RN7SL504P-201ENST00000494496 287 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 AP006245.1-201ENST00000522549 120 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 SAGE2P-201ENST00000420011 2126 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 FAM35DP-201ENST00000323387 2712 ntBASIC4.3□□□□□ -1.72
CCDC88AQ3V6T2 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 AL691447.1-201ENST00000419456 387 ntBASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 ELOCP18-201ENST00000434209 337 ntBASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 AC020893.1-201ENST00000502452 580 ntBASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 AC027309.2-201ENST00000520566 192 ntBASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 OR10D4P-201ENST00000525892 951 ntBASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 MFSD8-233ENST00000641482 4860 ntBASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC88AQ3V6T2 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 AC006023.1-201ENST00000603944 259 ntBASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 AC233309.1-201ENST00000619522 751 ntBASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 BX119904.1-201ENST00000432026 348 ntBASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 OR5AP1P-201ENST00000529730 940 ntBASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 HMGB1P50-201ENST00000605814 607 ntBASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 MIR6715A-201ENST00000615929 79 ntBASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 SNORD39.4-201ENST00000620099 78 ntBASIC4.28□□□□□ -1.72
CCDC88AQ3V6T2 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms