Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.03□□□□□ -1.6
HOXC9P31274 AL445183.3-201ENST00000414168 502 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.03□□□□□ -1.6
HOXC9P31274 AC114814.2-201ENST00000419195 485 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.03□□□□□ -1.6
HOXC9P31274 TRAPPC13P1-201ENST00000435991 1062 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 RPS27P5-201ENST00000444247 244 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXC9P31274 CYCSP20-201ENST00000473154 315 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 SETP6-201ENST00000479329 568 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.03□□□□□ -1.6
HOXC9P31274 AC074250.1-201ENST00000511117 192 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 RNU6-513P-201ENST00000516104 104 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 RNA5SP208-201ENST00000516156 78 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 DEFB109D-201ENST00000529497 240 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.03□□□□□ -1.6
HOXC9P31274 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXC9P31274 MEG8-215ENST00000555354 469 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXC9P31274 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.03□□□□□ -1.6
HOXC9P31274 MIR3200-201ENST00000580767 85 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
HOXC9P31274 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXC9P31274 BNIP3P40-201ENST00000596017 556 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXC9P31274 AC104763.3-201ENST00000613765 618 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
HOXC9P31274 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXC9P31274 MFSD8-236ENST00000641509 4050 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXC9P31274 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.03□□□□□ -1.6
HOXC9P31274 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXC9P31274 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
HOXC9P31274 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.02□□□□□ -1.61
HOXC9P31274 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXC9P31274 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC9P31274 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC9P31274 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXC9P31274 RNVU1-14-201ENST00000384770 164 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 RNU6-1000P-201ENST00000391066 106 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
HOXC9P31274 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC9P31274 AL024507.1-201ENST00000412741 274 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC9P31274 AL590609.2-201ENST00000421430 368 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC5.02□□□□□ -1.61
HOXC9P31274 RPL7P4-203ENST00000430239 730 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC9P31274 KCTD9P3-201ENST00000434597 1169 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AC006994.1-201ENST00000438212 839 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC9P31274 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC5.02□□□□□ -1.61
HOXC9P31274 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC9P31274 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC9P31274 AC069540.1-201ENST00000446320 988 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AL096829.2-201ENST00000446582 742 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AC084198.1-201ENST00000477747 402 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AC108941.1-201ENST00000502853 530 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.02□□□□□ -1.61
HOXC9P31274 AC133963.2-201ENST00000513686 578 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 RN7SKP13-201ENST00000515933 244 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC9P31274 AC104229.1-201ENST00000561364 255 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC5.02□□□□□ -1.61
HOXC9P31274 AC020914.6-201ENST00000594327 272 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AL354760.1-201ENST00000608357 643 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AL159169.3-201ENST00000608871 561 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXC9P31274 AC022960.3-201ENST00000619794 441 ntBASIC5.02□□□□□ -1.61
HOXC9P31274 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.02□□□□□ -1.61
HOXC9P31274 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC9P31274 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.02□□□□□ -1.61
HOXC9P31274 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC9P31274 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXC9P31274 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
HOXC9P31274 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC9P31274 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HOXC9P31274 TMEM161BP1-201ENST00000457388 1457 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXC9P31274 RNA5SP72-201ENST00000364442 117 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 AC104297.1-201ENST00000393779 870 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 AL136131.1-201ENST00000406079 803 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 RNU4-74P-201ENST00000411280 161 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 AC010385.1-201ENST00000412374 256 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 AL158825.1-201ENST00000414735 521 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXC9P31274 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXC9P31274 MTCO1P43-201ENST00000431831 488 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 CACYBPP1-201ENST00000438592 684 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXC9P31274 AC069285.2-201ENST00000440210 275 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXC9P31274 RPL21P23-201ENST00000446654 460 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC5.01□□□□□ -1.61
HOXC9P31274 AC008379.1-201ENST00000463655 464 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXC9P31274 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXC9P31274 AC025459.1-201ENST00000504072 156 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 DSTNP2-201ENST00000504533 515 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 RNU6-415P-201ENST00000516252 97 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms