Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 CENPIP1-201ENST00000425713 902 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 OFD1P12Y-201ENST00000427963 1207 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 ELOCP10-201ENST00000440624 327 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 MTND2P20-201ENST00000440805 661 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 COX6CP2-201ENST00000444980 225 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC073264.2-201ENST00000448886 166 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 NPM1P39-201ENST00000449818 867 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC009220.1-201ENST00000451614 275 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC006967.1-201ENST00000467608 589 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 SNX5P1-201ENST00000505757 1041 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 KRT19P6-201ENST00000510983 209 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 RNU6-488P-201ENST00000515918 99 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 RNU2-30P-201ENST00000516209 141 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AP006289.1-201ENST00000538089 277 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 NDUFB4P11-201ENST00000560510 395 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 MIR3611-201ENST00000584484 83 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 ELOCP34-201ENST00000604436 327 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC010200.2-201ENST00000605098 235 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AK6-205ENST00000618980 483 ntTSL 2 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AL356266.1-201ENST00000623311 483 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AL392088.2-201ENST00000637607 285 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AL031595.2-201ENST00000624215 19071 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 USP9YP4-201ENST00000424401 1745 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC093775.1-201ENST00000624154 1868 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 RPL21P132-201ENST00000331267 462 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 RNU6-1122P-201ENST00000384449 107 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 EI24P3-201ENST00000399046 1062 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AL121978.1-201ENST00000402778 359 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 NCSTNP1-201ENST00000406229 144 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 RN7SKP100-201ENST00000411258 284 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC016397.1-201ENST00000412463 242 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 MTCO2P34-201ENST00000421994 607 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 TRIM60P18-201ENST00000441518 828 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AURKAPS2-201ENST00000454983 333 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 ARPC3P2-201ENST00000457786 533 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 RNU6-956P-201ENST00000458868 103 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC006511.1-201ENST00000470614 315 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC011005.3-201ENST00000491624 395 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC004069.2-201ENST00000505438 1114 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AP000873.5-201ENST00000533906 236 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 OR5AN2P-201ENST00000534535 896 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 SERPINE4P-201ENST00000554978 281 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC012414.6-201ENST00000568241 401 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC022146.1-201ENST00000595307 847 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC080078.2-201ENST00000603766 501 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AC128687.1-201ENST00000605304 619 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AL139286.2-201ENST00000606838 396 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 AP000346.3-201ENST00000622821 210 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 MUC2-202ENST00000613187 4845 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms