Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MRPL35P4-201ENST00000453682 566 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC133473.1-201ENST00000455173 299 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC005008.1-201ENST00000456151 612 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC089999.1-201ENST00000460336 374 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 ATP5G1P3-201ENST00000463301 410 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC073522.1-201ENST00000483312 377 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC090013.1-201ENST00000485147 480 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 RPL23AP73-201ENST00000492507 471 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC104108.1-201ENST00000509930 412 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC135001.1-201ENST00000544546 283 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC244100.1-202ENST00000621554 382 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC006065.5-201ENST00000623427 349 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC008013.2-202ENST00000637965 364 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 FAM157B-203ENST00000639350 358 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 AC017007.4-201ENST00000503353 1352 ntBASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
HDDC3Q8N4P3 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AL627171.1-201ENST00000618845 1308 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 RNU6-650P-201ENST00000365658 111 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 ENSAP1-201ENST00000392855 326 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 RPL23AP48-201ENST00000406913 488 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 RNA5SP146-201ENST00000410743 123 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 OR8F1P-201ENST00000425243 930 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 PSMA2P3-201ENST00000429685 675 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 ETF1P3-201ENST00000430422 1160 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 UBE2V1P5-201ENST00000440070 405 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 snoU13.7-201ENST00000459220 104 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC087385.1-201ENST00000475062 312 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 RPS29P19-201ENST00000479709 171 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AF213884.1-201ENST00000488102 463 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 PTGES3P3-201ENST00000511479 482 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC133963.2-201ENST00000513686 578 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 Vault.1-201ENST00000516474 102 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC006064.5-201ENST00000541782 248 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC012254.4-201ENST00000588843 273 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 EIF1P6-201ENST00000600054 334 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AL359535.1-201ENST00000612100 1087 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC018926.3-201ENST00000618841 406 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 C2orf27A-204ENST00000623058 969 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 AC010608.2-201ENST00000624830 470 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 MIR4496-201ENST00000635896 61 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 RLIMP1-201ENST00000339626 1680 ntBASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HDDC3Q8N4P3 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms