Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SNORA62-201ENST00000365493 153 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC006011.1-201ENST00000442758 349 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 ARL5AP2-201ENST00000444698 533 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 YWHAQP9-201ENST00000445891 512 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 HMGB3P21-201ENST00000452483 547 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 RAD23BP3-201ENST00000454157 1152 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 RN7SL585P-201ENST00000470538 280 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC006517.1-201ENST00000480485 328 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 RPS27AP13-201ENST00000498403 237 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC112518.2-201ENST00000508565 425 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 SNORA70.14-201ENST00000516205 110 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 RNA5SP143-201ENST00000516936 115 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 TBCA-203ENST00000517679 545 ntTSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC138701.1-201ENST00000524329 714 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 POLR2KP1-201ENST00000553226 168 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC106734.1-201ENST00000568646 663 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 RN7SL600P-201ENST00000581811 299 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC115085.1-201ENST00000588924 229 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC006116.5-201ENST00000591936 559 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC098483.2-201ENST00000603158 454 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 Z82195.1-201ENST00000604558 398 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC092574.1-201ENST00000609771 420 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC106730.3-201ENST00000624568 641 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 AC008432.1-201ENST00000615912 1320 ntBASIC3.63□□□□□ -1.83
SKA3Q8IX90 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SKA3Q8IX90 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SKA3Q8IX90 MTCO1P18-201ENST00000455518 1419 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SKA3Q8IX90 EXOC5P1-201ENST00000510543 1969 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SKA3Q8IX90 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 SNORA37-201ENST00000384504 129 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SKA3Q8IX90 AL445183.3-201ENST00000414168 502 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 TCEA1P4-201ENST00000415066 844 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 MTCO2P1-201ENST00000424648 477 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC073069.1-201ENST00000428657 441 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC006511.1-201ENST00000470614 315 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 RN7SKP122-201ENST00000515923 296 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 RNU6-334P-201ENST00000517072 102 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 AP000916.1-201ENST00000533869 835 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 RPL23AP87-202ENST00000573039 466 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 MIR4716-201ENST00000579628 84 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 OR2BH1P-201ENST00000608850 864 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC084824.5-201ENST00000612009 413 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 MIR6716-201ENST00000613413 80 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC083809.1-201ENST00000615051 472 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC090246.1-201ENST00000616499 426 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC008785.1-201ENST00000624475 456 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 AC116667.1-201ENST00000604855 2072 ntBASIC3.62□□□□□ -1.83
SKA3Q8IX90 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
SKA3Q8IX90 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SKA3Q8IX90 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SKA3Q8IX90 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.62□□□□□ -1.83
SKA3Q8IX90 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SKA3Q8IX90 ZNF962P-201ENST00000443465 3140 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms