Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL513302.2-201ENST00000562313 1842 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA1P55317 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
FOXA1P55317 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA1P55317 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA1P55317 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA1P55317 OR13C3-201ENST00000374781 1108 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.38□□□□□ -1.87
FOXA1P55317 RN7SKP27-201ENST00000410684 333 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXA1P55317 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXA1P55317 AP000907.1-201ENST00000428428 510 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 BX679664.1-201ENST00000434429 253 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXA1P55317 AL138787.1-202ENST00000437804 898 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXA1P55317 AL645939.1-201ENST00000453429 797 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 HSPE1P22-201ENST00000456856 327 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXA1P55317 AC106872.2-201ENST00000494303 480 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 NPM1P41-201ENST00000512920 831 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXA1P55317 IGKV2D-23-201ENST00000518179 286 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.38□□□□□ -1.87
FOXA1P55317 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA1P55317 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.38□□□□□ -1.87
FOXA1P55317 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXA1P55317 AC074050.1-201ENST00000563247 211 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXA1P55317 AL135786.2-201ENST00000608422 615 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 AC090912.3-201ENST00000609775 533 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 uc_338.32-201ENST00000615087 172 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 AC099669.2-201ENST00000616549 437 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 AP003355.3-201ENST00000623465 114 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
FOXA1P55317 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA1P55317 PRO1804-201ENST00000623780 2050 ntBASIC3.38□□□□□ -1.87
FOXA1P55317 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA1P55317 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.38□□□□□ -1.87
FOXA1P55317 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
FOXA1P55317 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA1P55317 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA1P55317 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXA1P55317 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXA1P55317 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
FOXA1P55317 AC090337.1-201ENST00000579651 2074 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXA1P55317 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
FOXA1P55317 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
FOXA1P55317 Y_RNA.62-201ENST00000362840 99 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXA1P55317 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
FOXA1P55317 ATP5A1P2-201ENST00000412323 255 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.37□□□□□ -1.87
FOXA1P55317 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXA1P55317 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.37□□□□□ -1.87
FOXA1P55317 RPL7P2-201ENST00000427639 268 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 KCTD10P1-201ENST00000434203 625 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.37□□□□□ -1.87
FOXA1P55317 MTND4LP12-201ENST00000448237 295 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXA1P55317 PPIAP3-201ENST00000450588 505 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 OR6C72P-201ENST00000451403 892 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 RPL12P26-201ENST00000452430 487 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 RPL21P71-201ENST00000465598 459 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 AP000926.3-201ENST00000497201 299 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
FOXA1P55317 MTCO3P42-201ENST00000509488 518 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXA1P55317 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXA1P55317 MTCO3P39-201ENST00000514812 518 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.37□□□□□ -1.87
FOXA1P55317 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXA1P55317 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.37□□□□□ -1.87
FOXA1P55317 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC3.37□□□□□ -1.87
FOXA1P55317 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXA1P55317 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC3.37□□□□□ -1.87
FOXA1P55317 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXA1P55317 AC110741.2-201ENST00000605278 268 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 AC099676.1-201ENST00000608886 657 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 AC024941.1-201ENST00000612250 334 ntBASIC3.37□□□□□ -1.87
FOXA1P55317 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXA1P55317 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
FOXA1P55317 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
FOXA1P55317 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXA1P55317 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
FOXA1P55317 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
FOXA1P55317 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXA1P55317 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXA1P55317 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.36□□□□□ -1.87
FOXA1P55317 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXA1P55317 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
FOXA1P55317 AL590704.1-201ENST00000402856 794 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXA1P55317 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
FOXA1P55317 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.36□□□□□ -1.87
FOXA1P55317 AL158073.1-201ENST00000426848 1104 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXA1P55317 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.36□□□□□ -1.87
FOXA1P55317 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms