Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RPS3AP50-201ENST00000487064 803 ntBASIC4.44□□□□□ -1.7
COL18A1P39060 AC004069.2-201ENST00000505438 1114 ntBASIC4.44□□□□□ -1.7
COL18A1P39060 AC138409.2-202ENST00000507274 458 ntBASIC4.44□□□□□ -1.7
COL18A1P39060 OR4R3P-201ENST00000525084 838 ntBASIC4.44□□□□□ -1.7
COL18A1P39060 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.44□□□□□ -1.7
COL18A1P39060 AL583832.1-201ENST00000603227 784 ntBASIC4.44□□□□□ -1.7
COL18A1P39060 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.44□□□□□ -1.7
COL18A1P39060 AL713922.2-201ENST00000619384 716 ntBASIC4.44□□□□□ -1.7
COL18A1P39060 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL18A1P39060 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL18A1P39060 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.44□□□□□ -1.7
COL18A1P39060 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL18A1P39060 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL18A1P39060 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL18A1P39060 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL18A1P39060 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
COL18A1P39060 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
COL18A1P39060 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL18A1P39060 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
COL18A1P39060 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL18A1P39060 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL18A1P39060 RNU6-301P-201ENST00000384277 107 ntBASIC4.43□□□□□ -1.7
COL18A1P39060 AL139132.1-201ENST00000431587 344 ntBASIC4.43□□□□□ -1.7
COL18A1P39060 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.43□□□□□ -1.7
COL18A1P39060 AC025445.1-201ENST00000502728 300 ntBASIC4.43□□□□□ -1.7
COL18A1P39060 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.43□□□□□ -1.7
COL18A1P39060 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.43□□□□□ -1.7
COL18A1P39060 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL18A1P39060 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.43□□□□□ -1.7
COL18A1P39060 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
COL18A1P39060 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL18A1P39060 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL18A1P39060 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.43□□□□□ -1.7
COL18A1P39060 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC4.43□□□□□ -1.7
COL18A1P39060 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL18A1P39060 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.43□□□□□ -1.7
COL18A1P39060 RNU6-729P-201ENST00000384399 107 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL18A1P39060 IFNNP1-201ENST00000429219 553 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL18A1P39060 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.42□□□□□ -1.7
COL18A1P39060 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.42□□□□□ -1.7
COL18A1P39060 AC006023.1-201ENST00000603944 259 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.42□□□□□ -1.7
COL18A1P39060 AC233263.6-201ENST00000631132 1963 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL18A1P39060 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL18A1P39060 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.42□□□□□ -1.7
COL18A1P39060 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL18A1P39060 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL18A1P39060 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.42□□□□□ -1.7
COL18A1P39060 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.42□□□□□ -1.7
COL18A1P39060 SNORA7.4-201ENST00000384249 137 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.42□□□□□ -1.7
COL18A1P39060 AL024507.1-201ENST00000412741 274 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL18A1P39060 COTL1P1-201ENST00000422309 375 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 RPL23AP82-202ENST00000427528 469 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.42□□□□□ -1.7
COL18A1P39060 CENPBD1P1-201ENST00000464061 469 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 RPL5P30-201ENST00000465511 891 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC4.42□□□□□ -1.7
COL18A1P39060 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.42□□□□□ -1.7
COL18A1P39060 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.42□□□□□ -1.7
COL18A1P39060 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.42□□□□□ -1.7
COL18A1P39060 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.42□□□□□ -1.7
COL18A1P39060 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL18A1P39060 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.42□□□□□ -1.7
COL18A1P39060 MTND5P12-201ENST00000502851 1449 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 AF117829.1-206ENST00000621883 3802 ntBASIC4.42□□□□□ -1.7
COL18A1P39060 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL18A1P39060 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL18A1P39060 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL18A1P39060 AC068647.1-201ENST00000489539 2265 ntBASIC4.41□□□□□ -1.7
COL18A1P39060 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL18A1P39060 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL18A1P39060 AL160175.1-201ENST00000428124 247 ntBASIC4.41□□□□□ -1.7
COL18A1P39060 RPL7P28-201ENST00000437739 740 ntBASIC4.41□□□□□ -1.7
COL18A1P39060 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.41□□□□□ -1.7
COL18A1P39060 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.41□□□□□ -1.7
COL18A1P39060 HMGB3P14-201ENST00000494195 599 ntBASIC4.41□□□□□ -1.7
COL18A1P39060 APOOP4-201ENST00000513530 597 ntBASIC4.41□□□□□ -1.7
COL18A1P39060 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.41□□□□□ -1.7
COL18A1P39060 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.41□□□□□ -1.7
COL18A1P39060 MIR2682-201ENST00000580305 110 ntBASIC4.41□□□□□ -1.7
COL18A1P39060 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.41□□□□□ -1.7
COL18A1P39060 AC018692.3-201ENST00000623929 123 ntBASIC4.41□□□□□ -1.7
COL18A1P39060 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.41□□□□□ -1.7
COL18A1P39060 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL18A1P39060 AC007390.2-201ENST00000606229 3803 ntBASIC4.41□□□□□ -1.7
COL18A1P39060 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL18A1P39060 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL18A1P39060 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
COL18A1P39060 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.41□□□□□ -1.7
COL18A1P39060 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL18A1P39060 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL18A1P39060 TRGV5P-201ENST00000419915 354 ntBASIC4.4□□□□□ -1.7
COL18A1P39060 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL18A1P39060 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.4□□□□□ -1.7
COL18A1P39060 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.4□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms