Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 THAP12P8-201ENST00000447914 2115 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.28□□□□□ -1.72
BRCA1P38398 IGKV2-26-201ENST00000518305 343 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.28□□□□□ -1.72
BRCA1P38398 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.28□□□□□ -1.72
BRCA1P38398 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.28□□□□□ -1.72
BRCA1P38398 AC234775.3-201ENST00000564612 656 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AC009464.1-201ENST00000615731 469 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.28□□□□□ -1.72
BRCA1P38398 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.28□□□□□ -1.72
BRCA1P38398 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
BRCA1P38398 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
BRCA1P38398 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
BRCA1P38398 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.28□□□□□ -1.72
BRCA1P38398 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.28□□□□□ -1.72
BRCA1P38398 RPL23AP69-201ENST00000431134 458 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.28□□□□□ -1.72
BRCA1P38398 DDX6P1-205ENST00000441966 1436 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 RN7SL585P-201ENST00000470538 280 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 RPL7P38-201ENST00000488396 739 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AC139783.2-201ENST00000504847 1145 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.28□□□□□ -1.72
BRCA1P38398 SUMO2P20-201ENST00000520803 283 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.28□□□□□ -1.72
BRCA1P38398 SNORD39.2-201ENST00000579995 76 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AL359757.2-201ENST00000624309 274 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AC009950.2-201ENST00000636548 183 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AL596275.2-204ENST00000641628 552 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 AL596275.2-206ENST00000641957 626 ntBASIC4.28□□□□□ -1.72
BRCA1P38398 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
BRCA1P38398 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
BRCA1P38398 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
BRCA1P38398 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.27□□□□□ -1.73
BRCA1P38398 SNORA48.8-201ENST00000391324 134 ntBASIC4.27□□□□□ -1.73
BRCA1P38398 AL691447.1-201ENST00000419456 387 ntBASIC4.27□□□□□ -1.73
BRCA1P38398 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.27□□□□□ -1.73
BRCA1P38398 BX890604.2-201ENST00000427883 474 ntBASIC4.27□□□□□ -1.73
BRCA1P38398 OR2A20P-203ENST00000498397 1268 ntBASIC4.27□□□□□ -1.73
BRCA1P38398 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.27□□□□□ -1.73
BRCA1P38398 AC113192.3-201ENST00000529152 742 ntBASIC4.27□□□□□ -1.73
BRCA1P38398 AL121603.1-201ENST00000553815 142 ntBASIC4.27□□□□□ -1.73
BRCA1P38398 MTND6P33-201ENST00000571794 183 ntBASIC4.27□□□□□ -1.73
BRCA1P38398 AC006840.1-201ENST00000623069 542 ntBASIC4.27□□□□□ -1.73
BRCA1P38398 AL645937.1-201ENST00000641739 1652 ntBASIC4.27□□□□□ -1.73
BRCA1P38398 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
BRCA1P38398 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.27□□□□□ -1.73
BRCA1P38398 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
BRCA1P38398 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
BRCA1P38398 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.27□□□□□ -1.73
BRCA1P38398 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC4.27□□□□□ -1.73
BRCA1P38398 AC026523.2-201ENST00000625039 7739 ntBASIC4.27□□□□□ -1.73
BRCA1P38398 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.27□□□□□ -1.73
BRCA1P38398 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
BRCA1P38398 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.27□□□□□ -1.73
BRCA1P38398 IPO8P1-201ENST00000455509 3109 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 AL024507.1-201ENST00000412741 274 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 BX842559.1-201ENST00000419615 532 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.26□□□□□ -1.73
BRCA1P38398 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.26□□□□□ -1.73
BRCA1P38398 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.26□□□□□ -1.73
BRCA1P38398 SNRPFP2-201ENST00000440710 251 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.26□□□□□ -1.73
BRCA1P38398 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.26□□□□□ -1.73
BRCA1P38398 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC4.26□□□□□ -1.73
BRCA1P38398 AC027309.2-201ENST00000520566 192 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 AC004024.1-201ENST00000549244 247 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 AC011270.1-201ENST00000558606 583 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.26□□□□□ -1.73
BRCA1P38398 AC007390.2-201ENST00000606229 3803 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 AC105227.2-201ENST00000615075 605 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.26□□□□□ -1.73
BRCA1P38398 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.26□□□□□ -1.73
BRCA1P38398 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
BRCA1P38398 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
BRCA1P38398 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
BRCA1P38398 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.26□□□□□ -1.73
BRCA1P38398 AL606537.1-201ENST00000607258 2011 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
BRCA1P38398 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
BRCA1P38398 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.26□□□□□ -1.73
BRCA1P38398 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.26□□□□□ -1.73
BRCA1P38398 AC062016.1-201ENST00000355719 319 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 RNU6-1263P-201ENST00000384601 106 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.26□□□□□ -1.73
BRCA1P38398 MAPRE1P3-201ENST00000435438 796 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 MTCO3P17-201ENST00000443775 513 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 AC098824.1-201ENST00000453565 980 ntBASIC4.26□□□□□ -1.73
BRCA1P38398 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.26□□□□□ -1.73
BRCA1P38398 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms