Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL672296.1-201ENST00000427780 2158 ntBASIC3.45□□□□□ -1.86
VCANP13611 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.45□□□□□ -1.86
VCANP13611 SAGE2P-201ENST00000420011 2126 ntBASIC3.45□□□□□ -1.86
VCANP13611 RNA5SP229-201ENST00000410809 99 ntBASIC3.45□□□□□ -1.86
VCANP13611 AC019097.1-201ENST00000424783 735 ntBASIC3.45□□□□□ -1.86
VCANP13611 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.45□□□□□ -1.86
VCANP13611 RPL23AP89-201ENST00000439324 255 ntBASIC3.45□□□□□ -1.86
VCANP13611 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.45□□□□□ -1.86
VCANP13611 RPS29P31-201ENST00000446147 164 ntBASIC3.45□□□□□ -1.86
VCANP13611 AL513328.1-201ENST00000446460 224 ntBASIC3.45□□□□□ -1.86
VCANP13611 UBA52P3-201ENST00000491303 382 ntBASIC3.45□□□□□ -1.86
VCANP13611 AC108210.2-201ENST00000503681 201 ntBASIC3.45□□□□□ -1.86
VCANP13611 AC008011.1-201ENST00000545989 227 ntBASIC3.45□□□□□ -1.86
VCANP13611 AC023161.2-201ENST00000551218 780 ntBASIC3.45□□□□□ -1.86
VCANP13611 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.45□□□□□ -1.86
VCANP13611 AL162713.1-201ENST00000604480 262 ntBASIC3.45□□□□□ -1.86
VCANP13611 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.45□□□□□ -1.86
VCANP13611 AC104623.2-202ENST00000623477 4002 ntBASIC3.45□□□□□ -1.86
VCANP13611 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC3.45□□□□□ -1.86
VCANP13611 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VCANP13611 FTX-210ENST00000603037 8347 ntTSL 5 BASIC3.45□□□□□ -1.86
VCANP13611 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
VCANP13611 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
VCANP13611 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VCANP13611 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
VCANP13611 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
VCANP13611 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC3.45□□□□□ -1.86
VCANP13611 AC025554.1-201ENST00000505641 188 ntBASIC3.45□□□□□ -1.86
VCANP13611 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.45□□□□□ -1.86
VCANP13611 AC005242.1-201ENST00000585658 438 ntBASIC3.45□□□□□ -1.86
VCANP13611 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.45□□□□□ -1.86
VCANP13611 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.45□□□□□ -1.86
VCANP13611 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC3.44□□□□□ -1.86
VCANP13611 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
VCANP13611 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
VCANP13611 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VCANP13611 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VCANP13611 AC046144.1-201ENST00000478559 1853 ntBASIC3.44□□□□□ -1.86
VCANP13611 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
VCANP13611 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
VCANP13611 AC011742.1-201ENST00000431448 434 ntBASIC3.44□□□□□ -1.86
VCANP13611 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.44□□□□□ -1.86
VCANP13611 HMGB1P6-201ENST00000569046 646 ntBASIC3.44□□□□□ -1.86
VCANP13611 AL035413.2-201ENST00000604801 525 ntBASIC3.44□□□□□ -1.86
VCANP13611 AC105074.1-201ENST00000623380 3095 ntBASIC3.44□□□□□ -1.86
VCANP13611 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
VCANP13611 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
VCANP13611 AC097504.1-201ENST00000515103 2415 ntBASIC3.44□□□□□ -1.86
VCANP13611 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.44□□□□□ -1.86
VCANP13611 AL022323.4-201ENST00000623980 13120 ntBASIC3.44□□□□□ -1.86
VCANP13611 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC3.44□□□□□ -1.86
VCANP13611 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VCANP13611 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VCANP13611 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VCANP13611 DNM1P47-203ENST00000571780 12667 ntBASIC3.44□□□□□ -1.86
VCANP13611 RNU1-70P-201ENST00000362618 164 ntBASIC3.44□□□□□ -1.86
VCANP13611 RNU6-482P-201ENST00000391068 107 ntBASIC3.44□□□□□ -1.86
VCANP13611 RPS3AP26-201ENST00000398259 784 ntBASIC3.44□□□□□ -1.86
VCANP13611 MIR1271-201ENST00000408537 86 ntBASIC3.44□□□□□ -1.86
VCANP13611 GEMIN8P3-201ENST00000445417 720 ntBASIC3.44□□□□□ -1.86
VCANP13611 AC010468.1-201ENST00000461022 817 ntBASIC3.44□□□□□ -1.86
VCANP13611 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.44□□□□□ -1.86
VCANP13611 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.44□□□□□ -1.86
VCANP13611 OR6R2P-201ENST00000609216 300 ntBASIC3.44□□□□□ -1.86
VCANP13611 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.44□□□□□ -1.86
VCANP13611 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
VCANP13611 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VCANP13611 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VCANP13611 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.43□□□□□ -1.86
VCANP13611 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VCANP13611 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VCANP13611 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.43□□□□□ -1.86
VCANP13611 AC009963.1-201ENST00000417265 157 ntBASIC3.43□□□□□ -1.86
VCANP13611 FTH1P6-201ENST00000430768 320 ntBASIC3.43□□□□□ -1.86
VCANP13611 NDUFB1P1-201ENST00000435191 180 ntBASIC3.43□□□□□ -1.86
VCANP13611 EEF1B2P7-201ENST00000451177 676 ntBASIC3.43□□□□□ -1.86
VCANP13611 SEPT7P6-201ENST00000469999 1143 ntBASIC3.43□□□□□ -1.86
VCANP13611 RN7SKP46-201ENST00000515942 234 ntBASIC3.43□□□□□ -1.86
VCANP13611 IGLV3-26-201ENST00000520756 302 ntBASIC3.43□□□□□ -1.86
VCANP13611 AP002812.4-201ENST00000532139 286 ntBASIC3.43□□□□□ -1.86
VCANP13611 AC027281.1-201ENST00000574178 758 ntBASIC3.43□□□□□ -1.86
VCANP13611 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
VCANP13611 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.43□□□□□ -1.86
VCANP13611 SETP9-201ENST00000423837 832 ntBASIC3.43□□□□□ -1.86
VCANP13611 NPM1P48-201ENST00000436002 853 ntBASIC3.43□□□□□ -1.86
VCANP13611 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.43□□□□□ -1.86
VCANP13611 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.43□□□□□ -1.86
VCANP13611 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VCANP13611 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
VCANP13611 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VCANP13611 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
VCANP13611 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC3.43□□□□□ -1.86
VCANP13611 AC020656.2-201ENST00000613291 5309 ntBASIC3.43□□□□□ -1.86
VCANP13611 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VCANP13611 RPS24P12-201ENST00000402084 394 ntBASIC3.43□□□□□ -1.86
VCANP13611 AC007899.1-201ENST00000412776 775 ntBASIC3.43□□□□□ -1.86
VCANP13611 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.43□□□□□ -1.86
VCANP13611 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.43□□□□□ -1.86
VCANP13611 AL591473.1-201ENST00000464297 313 ntBASIC3.43□□□□□ -1.86
VCANP13611 DEFB109A-201ENST00000482450 265 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms