Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC012414.6-201ENST00000568241 401 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AC011477.5-201ENST00000586571 259 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.71□□□□□ -1.5
COL6A1P12109 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.71□□□□□ -1.5
COL6A1P12109 AC009027.1-201ENST00000604510 479 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AC068276.1-201ENST00000605793 379 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AP001521.2-201ENST00000608772 546 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AC012360.2-201ENST00000609349 391 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AC007684.1-201ENST00000609671 477 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AL359314.1-201ENST00000616913 261 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 STMN1P1-201ENST00000617809 440 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A1P12109 FTO-223ENST00000640179 210 ntTSL 5 BASIC5.71□□□□□ -1.5
COL6A1P12109 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A1P12109 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
COL6A1P12109 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.71□□□□□ -1.5
COL6A1P12109 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.71□□□□□ -1.5
COL6A1P12109 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
COL6A1P12109 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL6A1P12109 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A1P12109 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A1P12109 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A1P12109 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
COL6A1P12109 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A1P12109 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 AL138820.1-201ENST00000617901 5305 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 AL121657.1-201ENST00000327215 531 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 RNU4-91P-201ENST00000364778 135 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 RNY3P10-201ENST00000384764 102 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 SNORA66-201ENST00000384792 133 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A1P12109 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 RNU2-66P-201ENST00000410650 161 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A1P12109 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5.7□□□□□ -1.5
COL6A1P12109 MTND4P28-201ENST00000426217 387 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 AC004975.1-201ENST00000428733 208 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 AL512326.1-201ENST00000443050 721 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A1P12109 RPL5P24-201ENST00000463742 885 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 MTND1P16-201ENST00000465177 898 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 RN7SL41P-201ENST00000476144 297 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC5.7□□□□□ -1.5
COL6A1P12109 RPS24P16-201ENST00000497294 392 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A1P12109 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A1P12109 RPL37P25-201ENST00000507308 276 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 PGBD4P4-201ENST00000509673 613 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 ATP1B1P1-201ENST00000509767 915 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 HSPE1P23-201ENST00000509838 286 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 NPM1P6-201ENST00000521088 871 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC5.7□□□□□ -1.5
COL6A1P12109 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC5.7□□□□□ -1.5
COL6A1P12109 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.7□□□□□ -1.5
COL6A1P12109 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A1P12109 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A1P12109 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A1P12109 OR4K7P-201ENST00000580232 945 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 NF1P5-201ENST00000588287 448 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 RNF138P2-201ENST00000603490 592 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 LARP7P1-201ENST00000605576 316 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.7□□□□□ -1.5
COL6A1P12109 AC025253.1-201ENST00000613623 543 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 AC069209.1-201ENST00000619282 651 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A1P12109 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
COL6A1P12109 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
COL6A1P12109 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.7□□□□□ -1.5
COL6A1P12109 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
COL6A1P12109 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 AC004656.1-201ENST00000568479 4951 ntBASIC5.7□□□□□ -1.5
COL6A1P12109 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A1P12109 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A1P12109 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A1P12109 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 NSRP1P1-201ENST00000444067 1693 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL6A1P12109 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 CYP1D1P-201ENST00000416662 1433 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A1P12109 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
COL6A1P12109 RNU6-694P-201ENST00000364071 147 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 U3.10-201ENST00000364459 214 ntBASIC5.69□□□□□ -1.5
COL6A1P12109 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
COL6A1P12109 OR52E6-202ENST00000379946 954 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms