Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
SDC3O75056 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
SDC3O75056 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
SDC3O75056 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.04□□□□□ -1.76
SDC3O75056 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.04□□□□□ -1.76
SDC3O75056 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.04□□□□□ -1.76
SDC3O75056 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 RNU1-87P-201ENST00000363727 170 ntBASIC4.04□□□□□ -1.76
SDC3O75056 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.04□□□□□ -1.76
SDC3O75056 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.04□□□□□ -1.76
SDC3O75056 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.04□□□□□ -1.76
SDC3O75056 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.04□□□□□ -1.76
SDC3O75056 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.04□□□□□ -1.76
SDC3O75056 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.04□□□□□ -1.76
SDC3O75056 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 AC006011.1-201ENST00000442758 349 ntBASIC4.04□□□□□ -1.76
SDC3O75056 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.04□□□□□ -1.76
SDC3O75056 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.04□□□□□ -1.76
SDC3O75056 AC078857.1-201ENST00000469870 667 ntBASIC4.04□□□□□ -1.76
SDC3O75056 AC108022.1-201ENST00000493466 478 ntBASIC4.04□□□□□ -1.76
SDC3O75056 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC4.04□□□□□ -1.76
SDC3O75056 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.04□□□□□ -1.76
SDC3O75056 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC4.04□□□□□ -1.76
SDC3O75056 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.04□□□□□ -1.76
SDC3O75056 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.04□□□□□ -1.76
SDC3O75056 OR5H4P-201ENST00000510851 923 ntBASIC4.04□□□□□ -1.76
SDC3O75056 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.04□□□□□ -1.76
SDC3O75056 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.04□□□□□ -1.76
SDC3O75056 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.04□□□□□ -1.76
SDC3O75056 AC100770.1-201ENST00000532310 322 ntBASIC4.04□□□□□ -1.76
SDC3O75056 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.04□□□□□ -1.76
SDC3O75056 MTND4LP25-201ENST00000570218 163 ntBASIC4.04□□□□□ -1.76
SDC3O75056 AC107982.3-201ENST00000584957 985 ntBASIC4.04□□□□□ -1.76
SDC3O75056 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.04□□□□□ -1.76
SDC3O75056 AC090912.3-201ENST00000609775 533 ntBASIC4.04□□□□□ -1.76
SDC3O75056 AC006946.3-201ENST00000609791 756 ntBASIC4.04□□□□□ -1.76
SDC3O75056 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.04□□□□□ -1.76
SDC3O75056 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.04□□□□□ -1.76
SDC3O75056 CR392039.5-201ENST00000623201 510 ntBASIC4.04□□□□□ -1.76
SDC3O75056 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 SAGE2P-201ENST00000420011 2126 ntBASIC4.04□□□□□ -1.76
SDC3O75056 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDC3O75056 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
SDC3O75056 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.04□□□□□ -1.76
SDC3O75056 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
SDC3O75056 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
SDC3O75056 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SDC3O75056 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.03□□□□□ -1.76
SDC3O75056 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
SDC3O75056 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SDC3O75056 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.03□□□□□ -1.76
SDC3O75056 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
SDC3O75056 AL590704.1-201ENST00000402856 794 ntBASIC4.03□□□□□ -1.76
SDC3O75056 MIR1179-201ENST00000408703 91 ntBASIC4.03□□□□□ -1.76
SDC3O75056 AC004022.2-201ENST00000413824 193 ntBASIC4.03□□□□□ -1.76
SDC3O75056 AL158825.1-201ENST00000414735 521 ntBASIC4.03□□□□□ -1.76
SDC3O75056 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.03□□□□□ -1.76
SDC3O75056 PNRC2P1-201ENST00000423940 420 ntBASIC4.03□□□□□ -1.76
SDC3O75056 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SDC3O75056 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.03□□□□□ -1.76
SDC3O75056 RWDD4P2-201ENST00000426392 563 ntBASIC4.03□□□□□ -1.76
SDC3O75056 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.03□□□□□ -1.76
SDC3O75056 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.03□□□□□ -1.76
SDC3O75056 ARL5AP2-201ENST00000444698 533 ntBASIC4.03□□□□□ -1.76
SDC3O75056 AL358232.1-201ENST00000448030 501 ntBASIC4.03□□□□□ -1.76
SDC3O75056 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.03□□□□□ -1.76
SDC3O75056 TRBV8-2-201ENST00000475637 270 ntBASIC4.03□□□□□ -1.76
SDC3O75056 RWDD4P1-201ENST00000488019 565 ntBASIC4.03□□□□□ -1.76
SDC3O75056 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.03□□□□□ -1.76
SDC3O75056 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.03□□□□□ -1.76
SDC3O75056 COX6B1P6-201ENST00000522347 255 ntBASIC4.03□□□□□ -1.76
SDC3O75056 OSBPL9P3-201ENST00000534523 595 ntBASIC4.03□□□□□ -1.76
SDC3O75056 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SDC3O75056 AC067852.4-201ENST00000590314 478 ntBASIC4.03□□□□□ -1.76
SDC3O75056 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.03□□□□□ -1.76
SDC3O75056 AC078899.5-201ENST00000612475 178 ntBASIC4.03□□□□□ -1.76
SDC3O75056 AC023509.5-201ENST00000617434 807 ntBASIC4.03□□□□□ -1.76
SDC3O75056 AC039056.2-201ENST00000622261 511 ntBASIC4.03□□□□□ -1.76
SDC3O75056 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.03□□□□□ -1.76
SDC3O75056 AC083865.1-201ENST00000636634 831 ntBASIC4.03□□□□□ -1.76
SDC3O75056 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SDC3O75056 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SDC3O75056 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.77
SDC3O75056 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SDC3O75056 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SDC3O75056 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.02□□□□□ -1.77
SDC3O75056 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.02□□□□□ -1.77
SDC3O75056 AC022031.1-201ENST00000585985 2593 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms