Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC067852.7-201ENST00000623270 535 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 AL445984.1-201ENST00000637834 659 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS28Q9UK41 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS28Q9UK41 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS28Q9UK41 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS28Q9UK41 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS28Q9UK41 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS28Q9UK41 RNU6-1243P-201ENST00000364028 107 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 Y_RNA.578-201ENST00000390903 88 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 U3.22-201ENST00000391120 215 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC136624.1-201ENST00000400791 413 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 HSPD1P16-201ENST00000402302 394 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 FCF1P5-201ENST00000406490 482 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 ELOCP19-201ENST00000411919 318 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AL160275.2-201ENST00000412010 394 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AL450992.3-201ENST00000413192 568 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 MTND4P3-201ENST00000417829 541 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 RPL18P10-201ENST00000425606 538 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 RPP40P1-201ENST00000426762 456 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 MTCYBP32-201ENST00000427945 1084 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 Z77249.1-201ENST00000444622 1175 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 NDUFA5P9-201ENST00000472609 340 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC011352.3-201ENST00000505162 593 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC109471.1-201ENST00000511631 612 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC018797.3-201ENST00000513388 1241 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 RNU6-276P-201ENST00000516114 96 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC034205.1-201ENST00000520621 638 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 MTCO3P15-201ENST00000526563 574 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AP000827.1-201ENST00000527814 258 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 CENPUP2-201ENST00000555897 1186 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC091178.1-203ENST00000584586 279 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AL356218.2-201ENST00000605264 187 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC112220.2-201ENST00000605513 533 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC020634.1-201ENST00000608701 549 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC009237.17-201ENST00000618111 748 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AL035461.2-201ENST00000619201 524 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AL391262.2-201ENST00000622466 494 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 AC006065.6-201ENST00000625201 545 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 CPHL1P-201ENST00000461341 3407 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 ELL2P4-201ENST00000446870 1376 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 LINC00622-201ENST00000562811 1570 ntBASIC4.61□□□□□ -1.67
VPS28Q9UK41 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS28Q9UK41 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS28Q9UK41 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 AL592182.3-201ENST00000642132 3304 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 RNU5E-10P-201ENST00000363506 118 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 MIR122-201ENST00000385044 85 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 ENSAP1-201ENST00000392855 326 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 ATP5F1P2-201ENST00000398143 760 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 MTCO3P31-201ENST00000405526 789 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 ZNF603P-201ENST00000405613 487 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 VN1R51P-201ENST00000411675 945 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 RPS3AP9-201ENST00000417027 792 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 RAD23BP1-201ENST00000421404 1227 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AL356387.2-201ENST00000422272 243 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC016712.1-201ENST00000431088 378 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC011998.1-201ENST00000433403 117 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 PPIAP17-201ENST00000438507 471 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 MTCYBP42-201ENST00000444653 1130 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 RPL23AP43-201ENST00000446445 471 ntBASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms