Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 RNA5SP27-201ENST00000363839 119 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 MCTS2P-201ENST00000394552 546 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 MRM2-202ENST00000407040 582 ntTSL 3 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC013404.1-201ENST00000413068 249 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 HMGB3P31-201ENST00000413333 595 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC105402.1-201ENST00000413336 545 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 VTA1P1-201ENST00000414044 866 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 SLC4A1APP1-201ENST00000419995 602 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 ETF1P3-201ENST00000430422 1160 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 RPL12P28-201ENST00000430852 489 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 MTCO1P53-201ENST00000441633 699 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 CEACAMP7-201ENST00000444105 496 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 HSFY3P-201ENST00000444242 1191 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 Z95152.1-201ENST00000453556 656 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 RPL7P48-201ENST00000461513 746 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 PPIAP21-201ENST00000464473 501 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC108043.1-201ENST00000512696 574 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 SNORD116-26-201ENST00000516006 96 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 RNA5SP73-201ENST00000516744 108 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AP001207.2-201ENST00000519490 539 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC011611.5-201ENST00000552477 578 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC091042.1-201ENST00000579213 173 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 Z82195.1-201ENST00000604558 398 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 uc_338.13-201ENST00000618243 179 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AP005019.3-201ENST00000620418 560 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC024023.1-201ENST00000624530 922 ntBASIC3.99□□□□□ -1.77
NDE1Q9NXR1 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.99□□□□□ -1.77
NDE1Q9NXR1 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC022893.2-201ENST00000564832 3296 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 SNORA11F-201ENST00000408237 128 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 LSM5-205ENST00000409952 687 ntTSL 4 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC092638.1-201ENST00000411966 1275 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AL449283.1-202ENST00000418249 604 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 RPL23AP46-201ENST00000438548 490 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AL500522.2-201ENST00000448562 343 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 GTF2IP12-201ENST00000456547 356 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 RPL21P71-201ENST00000465598 459 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 RPL7AP6-201ENST00000477943 801 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 RPSAP50-201ENST00000481955 852 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC147055.3-201ENST00000510547 851 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC093752.1-206ENST00000511823 336 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AP001781.1-201ENST00000530977 207 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC025260.1-201ENST00000548858 430 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 NPM1P47-201ENST00000560843 856 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 ZNF971P-201ENST00000562068 1249 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 MIR548Y-201ENST00000582739 110 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms