Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 OR10J6P-201ENST00000289731 930 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AL583835.1-201ENST00000399570 407 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 PPIAP31-201ENST00000405422 495 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 RNU6-584P-201ENST00000410350 95 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 BTF3P10-201ENST00000433415 495 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 RPS7P5-201ENST00000441482 581 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AL358794.1-201ENST00000445689 381 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 RPS27AP13-201ENST00000498403 237 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 PRELID3BP6-201ENST00000503839 571 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 PGBD4P4-201ENST00000509673 613 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC006518.2-201ENST00000542513 940 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC096947.1-201ENST00000603233 470 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AL354984.3-201ENST00000604803 325 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AL160290.3-201ENST00000604869 165 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC013468.1-201ENST00000608680 598 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC092608.3-201ENST00000625017 386 ntBASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.2□□□□□ -1.74
CCDC3Q9BQI4 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC134882.1-201ENST00000603738 1676 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 MIR372-201ENST00000362225 67 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RN7SKP280-201ENST00000364196 304 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RPL32P23-201ENST00000397237 405 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RPS24P12-201ENST00000402084 394 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RPL7P27-201ENST00000403775 720 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RNU2-65P-201ENST00000410162 185 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RPL36AP36-201ENST00000418616 301 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 NPM1P24-201ENST00000428039 894 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 DYNLL1P7-201ENST00000429273 258 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RPL12P46-201ENST00000436610 195 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 ARL4AP3-201ENST00000441452 574 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC092809.1-201ENST00000441469 474 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AL512326.1-201ENST00000443050 721 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RPL37P3-201ENST00000456825 293 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 APOOP2-201ENST00000461561 539 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RPL6P9-201ENST00000466502 859 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC012158.1-204ENST00000483430 465 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AL132838.2-201ENST00000492041 314 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RNA5SP519-201ENST00000516480 119 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RNU6-1028P-201ENST00000517164 93 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 MED28P5-201ENST00000528254 438 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 RPL21P7-201ENST00000557463 483 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC090751.1-201ENST00000566966 267 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC034105.4-201ENST00000568304 277 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms