Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC009951.1-201ENST00000623674 2614 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 CYP1D1P-201ENST00000416662 1433 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 SGO1P1-201ENST00000603525 1447 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 USP9YP4-201ENST00000424401 1745 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 ZNF962P-201ENST00000443465 3140 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AL512646.1-201ENST00000269395 1077 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 RNA5SP443-201ENST00000363083 132 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 RNU6-707P-201ENST00000364647 95 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 GSTA8P-201ENST00000404253 637 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 VN1R8P-201ENST00000407739 893 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 OR51A3P-201ENST00000413596 924 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 KRR1P1-201ENST00000419430 803 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 RPL12P34-201ENST00000424532 479 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 CENPIP1-201ENST00000425713 902 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC007559.1-201ENST00000428736 355 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 RPS26P40-201ENST00000435209 294 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC005154.2-201ENST00000438110 379 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 ACTR3P2-201ENST00000439585 1257 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 EEF1A1P39-201ENST00000440791 250 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 CR769776.1-201ENST00000441254 787 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC004022.1-201ENST00000447766 1066 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 COX6CP18-201ENST00000448769 222 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 SNORD11.1-201ENST00000459482 85 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC079804.1-201ENST00000461922 436 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC007016.1-201ENST00000512110 244 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC112673.1-201ENST00000513168 575 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AL110118.1-201ENST00000553543 400 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 BPTFP1-201ENST00000579209 492 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 MIR4666A-201ENST00000580160 79 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 CCDC58P3-201ENST00000590792 430 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 RPL26P30-202ENST00000602923 645 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC069304.3-201ENST00000603938 1084 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AP004247.3-201ENST00000608682 624 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC015813.4-201ENST00000610469 179 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AP003072.4-201ENST00000624580 310 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC006065.6-201ENST00000625201 545 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 MFSD8-245ENST00000641743 948 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC108467.2-201ENST00000617640 1597 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
NKX3-1Q99801 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC092162.3-201ENST00000624511 1624 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
NKX3-1Q99801 AC134882.1-201ENST00000603738 1676 ntBASIC3.87□□□□□ -1.79
NKX3-1Q99801 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC046144.1-201ENST00000478559 1853 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
NKX3-1Q99801 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
NKX3-1Q99801 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 snoZ40.1-201ENST00000364540 72 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 RNU6-619P-201ENST00000365146 108 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 RNA5SP87-201ENST00000384155 118 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 MIR192-201ENST00000384915 110 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 Z98745.1-201ENST00000402553 494 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 LAP3P1-201ENST00000403648 294 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 FCF1P5-201ENST00000406490 482 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms