Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 MTND5P1-201ENST00000445440 1375 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 SAGE4P-201ENST00000442271 3381 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 MIR708-201ENST00000390708 88 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AL034403.1-201ENST00000399414 885 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC245054.1-201ENST00000420944 258 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 RPSAP41-201ENST00000439695 860 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC138938.1-201ENST00000515431 782 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 IGKV2-26-201ENST00000518305 343 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 CYCSP30-201ENST00000546447 172 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC010591.1-201ENST00000603941 649 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 TEX41-256ENST00000626411 368 ntTSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC063979.1-201ENST00000415539 377 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 RAC1P2-201ENST00000511164 579 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 HMGB1P50-201ENST00000605814 607 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 MIR4727-201ENST00000622232 55 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 DDX18P3-201ENST00000404856 2007 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC095050.2-201ENST00000510748 1458 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC005300.1-201ENST00000428401 373 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 CYCSP4-201ENST00000429682 331 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 RPL23AP69-201ENST00000431134 458 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 RPL23AP89-201ENST00000439324 255 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 RPL5P24-201ENST00000463742 885 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 CR383656.14-201ENST00000551951 406 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC008725.1-201ENST00000605123 2263 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 ARL6IP1P2-201ENST00000431356 563 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AP002884.2-201ENST00000471647 395 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 ATE1-AS1-202ENST00000636460 506 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 U3.39-201ENST00000408569 239 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC008885.1-201ENST00000514930 301 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 NACA-211ENST00000548563 827 ntTSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC015911.5-201ENST00000587076 451 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC134882.1-201ENST00000603738 1676 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC083863.1-201ENST00000438811 231 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 TRBV12-2-201ENST00000489763 344 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 MIR8058-201ENST00000615737 89 ntBASIC1.12□□□□□ -2.23
SYNE1Q8NF91 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC1.12□□□□□ -2.23
SYNE1Q8NF91 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
SYNE1Q8NF91 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC1.11□□□□□ -2.23
SYNE1Q8NF91 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
SYNE1Q8NF91 AC093775.1-201ENST00000624154 1868 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms