Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC010401.1-201ENST00000463867 348 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC110768.1-201ENST00000509222 400 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 RNU6-347P-201ENST00000516658 105 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 MTCO1P49-201ENST00000523429 802 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC084757.1-201ENST00000559987 490 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC079684.1-201ENST00000621405 437 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC092628.2-201ENST00000622492 339 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AC073530.2-201ENST00000623987 261 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AP002088.1-201ENST00000382740 395 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 RNA5SP424-201ENST00000390988 115 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AL356095.1-201ENST00000417217 199 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 HMGB3P20-201ENST00000417997 600 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 RPS12P23-201ENST00000419579 400 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 TCEA1P2-201ENST00000420496 906 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 HMGB3P5-201ENST00000428894 612 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 NDUFB1P1-201ENST00000435191 180 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 Z74696.2-201ENST00000436514 498 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 RPL21P89-201ENST00000444021 467 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AC044797.1-201ENST00000445744 679 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 TRBV8-2-201ENST00000475637 270 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 HMGB3P14-201ENST00000494195 599 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 FCF1P3-201ENST00000496394 590 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 OR8X1P-201ENST00000534542 869 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 MIR5047-201ENST00000579212 100 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AL732372.2-225ENST00000642124 456 ntBASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC112Q8NEF3 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 CASC19-261ENST00000641853 1638 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AL592437.2-201ENST00000421655 2434 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 RN7SKP280-201ENST00000364196 304 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 SNORA62.3-201ENST00000365110 153 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 TBCAP1-201ENST00000436520 327 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AC087312.1-201ENST00000471411 480 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 RPS3AP6-201ENST00000484430 795 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AC068714.1-201ENST00000559623 800 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AC234775.3-201ENST00000564612 656 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AC010680.3-201ENST00000604215 520 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 SNORA62.6-201ENST00000606322 83 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 MIR92B-201ENST00000607575 96 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 AL450489.1-201ENST00000612071 468 ntBASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC112Q8NEF3 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
CCDC112Q8NEF3 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms