Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 AP001148.1-201ENST00000624124 2359 ntBASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF540Q8NDQ6 OR5T3-201ENST00000303059 1023 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 RNA5SP27-201ENST00000363839 119 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 RNU6-335P-201ENST00000364563 113 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 SNORA71.2-201ENST00000364941 134 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 MIR1911-201ENST00000410783 80 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 RPS20P25-201ENST00000412447 352 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 GSTA7P-201ENST00000438425 448 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 MTND2P25-201ENST00000449028 610 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 ABCF2P2-201ENST00000450549 296 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 RN7SL585P-201ENST00000470538 280 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AC078785.3-201ENST00000476607 425 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 RPL36AP41-201ENST00000493820 306 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 RNF138P1-201ENST00000502765 546 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 HPRT1P1-201ENST00000509498 657 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AC034205.1-201ENST00000520621 638 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 ATP5F1P7-201ENST00000567330 760 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AC068790.7-201ENST00000602347 528 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 HMGN2P28-201ENST00000606102 262 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AC005156.1-201ENST00000613371 573 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AC006338.2-201ENST00000616864 791 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AL731566.2-201ENST00000618971 317 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AL109659.3-201ENST00000624985 950 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 AC068620.4-201ENST00000636730 1182 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 MAPK10-253ENST00000641010 4072 ntBASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
ZNF540Q8NDQ6 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC108467.2-201ENST00000617640 1597 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 OTUD4P1-201ENST00000237841 3067 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 SNORD113.2-201ENST00000364166 89 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 SNORA11C-201ENST00000408532 129 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 RN7SKP106-201ENST00000410832 272 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 RNU6-272P-201ENST00000411028 104 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 RNA5SP306-201ENST00000411087 107 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC140479.3-201ENST00000418944 1126 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC092647.1-201ENST00000420654 287 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 RPL7P28-201ENST00000437739 740 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 HMGB1P12-201ENST00000438594 598 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC009263.1-201ENST00000441193 1239 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 ARL2BPP10-201ENST00000446487 531 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC012671.1-201ENST00000451912 203 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 NF1P3-201ENST00000457709 450 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 NFU1-207ENST00000462320 558 ntTSL 4 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 RPS23P7-201ENST00000466210 444 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 IGLV2-34-201ENST00000490007 283 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC093720.1-201ENST00000505681 714 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AL110118.1-201ENST00000553543 400 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC008745.1-201ENST00000604064 271 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 AC018555.1-201ENST00000567548 1980 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 LINC00622-201ENST00000562811 1570 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 MTND4P8-201ENST00000514997 1362 ntBASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
ZNF540Q8NDQ6 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms