Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
USP39Q53GS9 MIR192-201ENST00000384915 110 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 RPL17P50-201ENST00000396131 546 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 AC013442.1-201ENST00000397347 228 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 PPIAP9-201ENST00000403866 498 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 RNA5SP80-201ENST00000410475 111 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 RPS7P13-201ENST00000413955 498 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 NUP35P2-201ENST00000416748 943 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 Z97055.1-201ENST00000419730 712 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 DDX39BP1-205ENST00000422507 192 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 AL136231.1-201ENST00000429407 730 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 AC000111.3-201ENST00000433478 193 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.29□□□□□ -1.56
USP39Q53GS9 RPL5P25-201ENST00000441148 775 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 FTH1P2-201ENST00000466086 412 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 AC006499.5-201ENST00000505037 514 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 PRELID3BP4-201ENST00000515476 571 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC5.29□□□□□ -1.56
USP39Q53GS9 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.29□□□□□ -1.56
USP39Q53GS9 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC5.29□□□□□ -1.56
USP39Q53GS9 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.29□□□□□ -1.56
USP39Q53GS9 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
USP39Q53GS9 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 AC006363.1-201ENST00000603806 463 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 AC011374.2-201ENST00000607135 526 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 MIR7844-201ENST00000616161 122 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 AL136981.2-201ENST00000617319 734 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 AC025048.6-202ENST00000627667 438 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 AC112198.2-201ENST00000426589 6996 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 MAPK10-338ENST00000641647 3362 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.28□□□□□ -1.56
USP39Q53GS9 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
USP39Q53GS9 AL022322.2-201ENST00000624072 20397 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
USP39Q53GS9 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.28□□□□□ -1.56
USP39Q53GS9 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.28□□□□□ -1.56
USP39Q53GS9 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 RNU6-181P-201ENST00000363225 107 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 RNA5SP455-201ENST00000365190 119 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.28□□□□□ -1.56
USP39Q53GS9 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
USP39Q53GS9 SNORD56.6-201ENST00000384569 71 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 SNORD115-47-201ENST00000391226 86 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 NRBF2P2-201ENST00000413087 861 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AC138393.2-201ENST00000414742 246 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 UBTFL3-201ENST00000418934 1024 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC5.28□□□□□ -1.56
USP39Q53GS9 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.28□□□□□ -1.56
USP39Q53GS9 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.28□□□□□ -1.56
USP39Q53GS9 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC5.28□□□□□ -1.56
USP39Q53GS9 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.28□□□□□ -1.56
USP39Q53GS9 AL035458.1-201ENST00000433096 585 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC5.28□□□□□ -1.56
USP39Q53GS9 MTND3P21-201ENST00000433774 331 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
USP39Q53GS9 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
USP39Q53GS9 RPS29P33-201ENST00000456717 146 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 OR9M1P-201ENST00000459641 921 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.28□□□□□ -1.56
USP39Q53GS9 TMED11P-201ENST00000479478 690 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AC107398.1-201ENST00000486904 505 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AC093267.1-201ENST00000489176 961 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC5.28□□□□□ -1.56
USP39Q53GS9 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC5.28□□□□□ -1.56
USP39Q53GS9 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC5.28□□□□□ -1.56
USP39Q53GS9 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
USP39Q53GS9 AC008033.2-201ENST00000542626 177 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 BNIP3P1-201ENST00000547295 580 ntBASIC5.28□□□□□ -1.56
USP39Q53GS9 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms