Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 BMS1P3-201ENST00000372011 932 ntBASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 RBMY2UP-201ENST00000453474 324 ntBASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 AC006116.10-201ENST00000591836 581 ntBASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 AL122125.1-201ENST00000616999 600 ntBASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 RNU6-729P-201ENST00000384399 107 ntBASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 RN7SKP209-201ENST00000516888 304 ntBASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 AP003392.5-201ENST00000607857 415 ntBASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 U3.39-201ENST00000408569 239 ntBASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 RPL26P28-201ENST00000451325 435 ntBASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 UBE2NP1-201ENST00000545592 458 ntBASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 AC084036.1-201ENST00000609190 508 ntBASIC4.37□□□□□ -1.71
CCDC88AQ3V6T2 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 MTCO1P7-201ENST00000419523 1542 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 RN7SKP53-201ENST00000411337 315 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 BX323014.1-201ENST00000412876 237 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 HSPE1P27-201ENST00000430808 296 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 FTLP19-201ENST00000433300 394 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 AF228730.2-201ENST00000438784 848 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 RPS27AP1-201ENST00000475545 471 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 UBA52P3-201ENST00000491303 382 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 AC034105.3-201ENST00000565294 442 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 MIR4276-201ENST00000584832 70 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC88AQ3V6T2 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AC090337.1-201ENST00000579651 2074 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 TTC39DP-201ENST00000416781 1688 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 FRG1CP-201ENST00000358464 769 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 RNU6-301P-201ENST00000384277 107 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AL139095.1-201ENST00000404326 391 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 OSTCP5-201ENST00000425293 453 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 OR5AW1P-201ENST00000426334 1006 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 UBE2V1P1-201ENST00000430836 445 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 RN7SL429P-201ENST00000479090 223 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 RN7SL489P-201ENST00000486185 223 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 RN7SL327P-201ENST00000488659 223 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AC138409.2-202ENST00000507274 458 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AC092747.2-201ENST00000545069 983 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 RN7SL853P-201ENST00000617250 223 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 MAPK10-320ENST00000641462 6696 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms