Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 RPS5P7-201ENST00000456664 608 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 RN7SL303P-201ENST00000469773 251 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC090686.1-201ENST00000481577 749 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 SCARNA22-201ENST00000503991 125 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 HIGD1AP6-201ENST00000521833 279 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 OR8R1P-201ENST00000543943 764 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC004217.3-201ENST00000551552 878 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC116553.2-201ENST00000564203 463 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 MIR5708-201ENST00000579723 85 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 VN1R83P-201ENST00000595685 445 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 IPO5P1-202ENST00000600039 287 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC140725.3-201ENST00000616193 880 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC006386.1-201ENST00000619436 415 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC019206.1-201ENST00000621938 425 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC015908.5-201ENST00000623289 343 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 CASC19-206ENST00000641028 1430 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 AC025031.4-201ENST00000621248 3271 ntBASIC4.54□□□□□ -1.68
COL28A1Q2UY09 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL28A1Q2UY09 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 RNU6-636P-201ENST00000384598 107 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 SFR1P1-201ENST00000403720 688 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 RPL31P52-201ENST00000407532 367 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 RNU6-272P-201ENST00000411028 104 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC114755.2-201ENST00000413520 361 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 HIGD1AP15-201ENST00000416198 280 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 ATG4AP1-201ENST00000416893 538 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 RPL22P18-201ENST00000417197 377 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 PAICSP7-201ENST00000419829 962 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC004022.1-201ENST00000447766 1066 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC239809.1-201ENST00000450470 217 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 UBA52P3-201ENST00000491303 382 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC015795.1-201ENST00000513669 327 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 RN7SKP287-201ENST00000516546 266 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC092747.2-201ENST00000545069 983 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC025884.1-201ENST00000556034 378 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 MTND3P13-201ENST00000574391 343 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC091488.1-201ENST00000604239 660 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC021749.1-201ENST00000604322 607 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AL161756.2-201ENST00000604597 246 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC093424.1-201ENST00000604999 338 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AL049794.2-201ENST00000616301 365 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC091953.5-201ENST00000622919 233 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AP000843.1-201ENST00000624880 701 ntBASIC4.53□□□□□ -1.68
COL28A1Q2UY09 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
COL28A1Q2UY09 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms