Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SMARCA1P28370 AC073387.1-201ENST00000453261 709 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 RFC5P1-201ENST00000454419 874 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AL109741.2-201ENST00000455561 343 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 TPTE2P5-203ENST00000458118 728 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AC108734.3-201ENST00000481241 1165 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC5.39□□□□□ -1.55
SMARCA1P28370 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
SMARCA1P28370 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC5.39□□□□□ -1.55
SMARCA1P28370 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC5.39□□□□□ -1.55
SMARCA1P28370 AC008562.1-201ENST00000521763 330 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AC090819.1-201ENST00000523800 1111 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC5.39□□□□□ -1.55
SMARCA1P28370 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.39□□□□□ -1.55
SMARCA1P28370 LYZ-203ENST00000549690 669 ntTSL 2 BASIC5.39□□□□□ -1.55
SMARCA1P28370 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC5.39□□□□□ -1.55
SMARCA1P28370 AC002400.1-201ENST00000569310 726 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 MTCYBP33-201ENST00000575007 1130 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.39□□□□□ -1.55
SMARCA1P28370 AC022069.1-201ENST00000582910 658 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 RN7SL435P-201ENST00000584418 282 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 MIR4999-201ENST00000585029 91 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AP004247.3-201ENST00000608682 624 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AL136295.6-201ENST00000610486 658 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 MIR6820-201ENST00000611508 62 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AC123768.4-201ENST00000616244 701 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AC131238.1-201ENST00000617135 328 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 MIR7703-201ENST00000620784 77 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 AC079248.2-201ENST00000623779 326 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 U3.53-201ENST00000628922 216 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SMARCA1P28370 AL451142.2-201ENST00000429076 2090 ntBASIC5.39□□□□□ -1.55
SMARCA1P28370 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
SMARCA1P28370 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SMARCA1P28370 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.39□□□□□ -1.55
SMARCA1P28370 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SMARCA1P28370 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
SMARCA1P28370 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.39□□□□□ -1.55
SMARCA1P28370 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
SMARCA1P28370 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.38□□□□□ -1.55
SMARCA1P28370 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SMARCA1P28370 RNU1-83P-201ENST00000363426 164 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 MIR217-201ENST00000384817 110 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 CYB5AP4-201ENST00000396692 399 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AL590084.2-201ENST00000401481 382 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AL592291.1-201ENST00000403830 352 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 RPS16P5-201ENST00000406501 404 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 RN7SKP106-201ENST00000410832 272 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 RNU2-6P-201ENST00000411404 190 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AL161449.1-201ENST00000414531 1199 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC234782.4-201ENST00000417646 1048 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 BLOC1S2P1-201ENST00000428431 301 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 SEPT7P5-201ENST00000434048 306 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AL606662.1-201ENST00000445763 553 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AL031584.1-201ENST00000447169 754 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AL162591.2-201ENST00000449634 317 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.38□□□□□ -1.55
SMARCA1P28370 RPS27AP8-201ENST00000452665 445 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 RNA5SP103-201ENST00000459503 118 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC006511.1-201ENST00000470614 315 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC5.38□□□□□ -1.55
SMARCA1P28370 MTND3P7-201ENST00000474435 343 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 RPL12P20-201ENST00000475538 479 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 LINC00888-204ENST00000487386 421 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 RPS27P23-201ENST00000487608 251 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.38□□□□□ -1.55
SMARCA1P28370 WBP1LP4-201ENST00000505043 344 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC111000.2-201ENST00000507775 550 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC117532.1-201ENST00000514638 323 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 RNU6-759P-201ENST00000516740 103 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 RNU6-232P-201ENST00000517144 64 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC087808.1-201ENST00000520501 361 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 MTCO1P49-201ENST00000523429 802 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC005832.3-201ENST00000537929 631 ntBASIC5.38□□□□□ -1.55
SMARCA1P28370 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SMARCA1P28370 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC5.38□□□□□ -1.55
SMARCA1P28370 AC234771.5-201ENST00000600161 514 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms