Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC5.82□□□□□ -1.48
COL8A1P27658 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 AL049555.1-201ENST00000562834 1933 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.82□□□□□ -1.48
COL8A1P27658 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
COL8A1P27658 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC5.82□□□□□ -1.48
COL8A1P27658 DMD-202ENST00000343523 5623 ntTSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 Y_RNA.20-201ENST00000362479 113 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 Y_RNA.276-201ENST00000364732 109 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 PPIAP26-201ENST00000377951 522 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 SNORD116-11-201ENST00000383882 92 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 MIR454-201ENST00000390180 115 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 AC008171.1-201ENST00000395058 200 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 RN7SKP286-201ENST00000410894 299 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 RNU2-71P-201ENST00000411395 189 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 RPSAP35-201ENST00000413753 818 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC5.82□□□□□ -1.48
COL8A1P27658 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.82□□□□□ -1.48
COL8A1P27658 GAPDHP33-201ENST00000443168 1013 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 AC004980.3-201ENST00000447046 365 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 RNU7-180P-201ENST00000459240 63 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 AC026336.1-201ENST00000466577 351 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.82□□□□□ -1.48
COL8A1P27658 AC025458.1-201ENST00000506046 166 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 AL390198.2-201ENST00000510553 222 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 CYCSP25-201ENST00000525280 316 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 AP005597.2-201ENST00000526238 341 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.82□□□□□ -1.48
COL8A1P27658 RPL3P13-201ENST00000550415 216 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC5.82□□□□□ -1.48
COL8A1P27658 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 AC104662.1-201ENST00000604448 511 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 CR382285.1-202ENST00000604687 547 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 SDR42E1P2-201ENST00000614861 481 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 SDR42E1P4-201ENST00000620894 481 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 MIR6730-201ENST00000622213 67 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 SNORA16A-202ENST00000628458 135 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 DRG1-207ENST00000629688 309 ntTSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL8A1P27658 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC5.82□□□□□ -1.48
COL8A1P27658 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 AC107980.1-201ENST00000558671 3355 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 AP002833.3-201ENST00000625075 2265 ntBASIC5.82□□□□□ -1.48
COL8A1P27658 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC5.82□□□□□ -1.48
COL8A1P27658 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC5.82□□□□□ -1.48
COL8A1P27658 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
COL8A1P27658 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
COL8A1P27658 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
COL8A1P27658 CASC19-246ENST00000641625 1606 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 LINC01359-204ENST00000447748 2804 ntTSL 2 BASIC5.81□□□□□ -1.48
COL8A1P27658 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL8A1P27658 ZNF677-206ENST00000598513 3497 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC5.81□□□□□ -1.48
COL8A1P27658 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 AL034417.4-202ENST00000642135 2236 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 RNU6-280P-201ENST00000364145 104 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 Y_RNA.485-201ENST00000384395 102 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 RNU2-29P-201ENST00000410423 189 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 RPS6P23-201ENST00000413224 722 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 RPL21P24-201ENST00000413752 448 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 RPS15AP12-201ENST00000419498 388 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.81□□□□□ -1.48
COL8A1P27658 EIF1P2-201ENST00000428233 350 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 OR4K11P-201ENST00000431829 904 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.81□□□□□ -1.48
COL8A1P27658 RPL7P28-201ENST00000437739 740 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 FTH1P25-201ENST00000447665 469 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AL935212.3-201ENST00000450729 284 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.81□□□□□ -1.48
COL8A1P27658 AC083806.1-201ENST00000468934 316 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 RN7SL717P-201ENST00000478343 297 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AC015724.1-201ENST00000478577 156 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AC034222.1-201ENST00000494052 532 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 RPL24-206ENST00000495401 478 ntTSL 2 BASIC5.81□□□□□ -1.48
COL8A1P27658 LSM3P4-201ENST00000502948 309 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AC114801.2-201ENST00000503825 781 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AC018645.1-201ENST00000505003 109 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms