Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.47□□□□□ -1.85
COL5A1P20908 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A1P20908 MIR7851-201ENST00000610611 160 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A1P20908 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A1P20908 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
COL5A1P20908 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC3.47□□□□□ -1.85
COL5A1P20908 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
COL5A1P20908 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A1P20908 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
COL5A1P20908 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.47□□□□□ -1.85
COL5A1P20908 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.47□□□□□ -1.85
COL5A1P20908 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A1P20908 AL139095.1-201ENST00000404326 391 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 AJ239321.1-201ENST00000424255 564 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 OR5AW1P-201ENST00000426334 1006 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 AC233982.1-201ENST00000451247 436 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.47□□□□□ -1.85
COL5A1P20908 AC096576.1-201ENST00000489014 359 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.47□□□□□ -1.85
COL5A1P20908 HNRNPKP5-201ENST00000515300 253 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 RN7SKP209-201ENST00000516888 304 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.47□□□□□ -1.85
COL5A1P20908 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC3.47□□□□□ -1.85
COL5A1P20908 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.47□□□□□ -1.85
COL5A1P20908 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
COL5A1P20908 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL5A1P20908 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL5A1P20908 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
COL5A1P20908 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.46□□□□□ -1.86
COL5A1P20908 RNA5SP296-201ENST00000410523 111 ntBASIC3.46□□□□□ -1.86
COL5A1P20908 ELOCP18-201ENST00000434209 337 ntBASIC3.46□□□□□ -1.86
COL5A1P20908 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.46□□□□□ -1.86
COL5A1P20908 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.46□□□□□ -1.86
COL5A1P20908 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.46□□□□□ -1.86
COL5A1P20908 AL671855.1-201ENST00000446875 1203 ntBASIC3.46□□□□□ -1.86
COL5A1P20908 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC3.46□□□□□ -1.86
COL5A1P20908 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC3.46□□□□□ -1.86
COL5A1P20908 RPS26P24-201ENST00000497656 331 ntBASIC3.46□□□□□ -1.86
COL5A1P20908 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.46□□□□□ -1.86
COL5A1P20908 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.46□□□□□ -1.86
COL5A1P20908 AC023161.2-201ENST00000551218 780 ntBASIC3.46□□□□□ -1.86
COL5A1P20908 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.46□□□□□ -1.86
COL5A1P20908 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.46□□□□□ -1.86
COL5A1P20908 OR1AB1P-201ENST00000585564 761 ntBASIC3.46□□□□□ -1.86
COL5A1P20908 AC104984.5-201ENST00000586878 94 ntBASIC3.46□□□□□ -1.86
COL5A1P20908 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.46□□□□□ -1.86
COL5A1P20908 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.46□□□□□ -1.86
COL5A1P20908 AL033523.1-201ENST00000605153 153 ntBASIC3.46□□□□□ -1.86
COL5A1P20908 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.46□□□□□ -1.86
COL5A1P20908 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.46□□□□□ -1.86
COL5A1P20908 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL5A1P20908 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC3.46□□□□□ -1.86
COL5A1P20908 MTCO1P7-201ENST00000419523 1542 ntBASIC3.46□□□□□ -1.86
COL5A1P20908 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.46□□□□□ -1.86
COL5A1P20908 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL5A1P20908 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC3.46□□□□□ -1.86
COL5A1P20908 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL5A1P20908 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL5A1P20908 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC3.45□□□□□ -1.86
COL5A1P20908 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
COL5A1P20908 RPL23AP57-201ENST00000332361 466 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 RNA5SP322-201ENST00000363617 119 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 U3.19-201ENST00000390893 196 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 AL691447.1-201ENST00000419456 387 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.45□□□□□ -1.86
COL5A1P20908 MOB1AP1-201ENST00000430903 535 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 BX119904.1-201ENST00000432026 348 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC3.45□□□□□ -1.86
COL5A1P20908 AC091862.1-201ENST00000438016 1100 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 TMED11P-201ENST00000479478 690 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 BTF3L4P4-201ENST00000506381 449 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.45□□□□□ -1.86
COL5A1P20908 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.45□□□□□ -1.86
COL5A1P20908 Vault.1-201ENST00000516474 102 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.45□□□□□ -1.86
COL5A1P20908 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.45□□□□□ -1.86
COL5A1P20908 MIR5004-201ENST00000579078 107 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 AP003355.3-201ENST00000623465 114 ntBASIC3.45□□□□□ -1.86
COL5A1P20908 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC3.45□□□□□ -1.86
COL5A1P20908 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL5A1P20908 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.45□□□□□ -1.86
COL5A1P20908 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC3.45□□□□□ -1.86
COL5A1P20908 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL5A1P20908 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL5A1P20908 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL5A1P20908 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.45□□□□□ -1.86
COL5A1P20908 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL5A1P20908 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
COL5A1P20908 UBE2V1P2-201ENST00000397758 440 ntBASIC3.44□□□□□ -1.86
COL5A1P20908 SEPT7P2-202ENST00000398921 823 ntBASIC3.44□□□□□ -1.86
COL5A1P20908 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.44□□□□□ -1.86
COL5A1P20908 MTND2P11-201ENST00000423638 648 ntBASIC3.44□□□□□ -1.86
COL5A1P20908 SDCBPP2-201ENST00000424643 885 ntBASIC3.44□□□□□ -1.86
COL5A1P20908 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.44□□□□□ -1.86
COL5A1P20908 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.44□□□□□ -1.86
COL5A1P20908 RSL24D1P3-201ENST00000449255 495 ntBASIC3.44□□□□□ -1.86
COL5A1P20908 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms