Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC121247.2-201ENST00000604776 136 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 AL592436.1-201ENST00000605135 558 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 AP002360.4-201ENST00000606980 481 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 AC004492.1-201ENST00000607036 742 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 AL355073.2-201ENST00000612106 557 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
COL3A1P02461 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
COL3A1P02461 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL3A1P02461 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL3A1P02461 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL3A1P02461 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC5.33□□□□□ -1.56
COL3A1P02461 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
COL3A1P02461 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
COL3A1P02461 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
COL3A1P02461 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL3A1P02461 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL3A1P02461 RNA5SP124-201ENST00000362739 110 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 RNU6-792P-201ENST00000363490 107 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AL355379.1-201ENST00000405542 640 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 UBE2V1P11-201ENST00000411559 285 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 USP9YP26-201ENST00000421008 661 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC5.32□□□□□ -1.56
COL3A1P02461 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 FABP3P2-201ENST00000453169 399 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC5.32□□□□□ -1.56
COL3A1P02461 RPL32P14-201ENST00000463196 378 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC5.32□□□□□ -1.56
COL3A1P02461 AC118282.2-201ENST00000508739 374 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 SNORA67.7-201ENST00000516664 135 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC091163.3-201ENST00000518269 1144 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AP001207.2-201ENST00000519490 539 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC5.32□□□□□ -1.56
COL3A1P02461 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 AC009094.1-201ENST00000564443 426 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 MTATP6P3-201ENST00000581686 676 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC5.32□□□□□ -1.56
COL3A1P02461 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.32□□□□□ -1.56
COL3A1P02461 RBM11P1-201ENST00000604951 799 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AP005229.2-201ENST00000609980 697 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC004241.3-201ENST00000611728 517 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC005609.4-201ENST00000625071 447 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC092192.1-201ENST00000633154 1018 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AL161912.2-201ENST00000565707 3007 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL3A1P02461 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL3A1P02461 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.32□□□□□ -1.56
COL3A1P02461 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL3A1P02461 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL3A1P02461 SNORD115-48-201ENST00000364764 76 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 MIR513B-201ENST00000385136 84 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC233289.1-201ENST00000403700 508 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 RAP1BP3-201ENST00000407180 549 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL3A1P02461 AL356320.2-201ENST00000417263 507 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL3A1P02461 AL390023.1-201ENST00000428836 262 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC011742.1-201ENST00000431448 434 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL3A1P02461 MTND4P18-201ENST00000447010 465 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 AP002371.1-201ENST00000463604 433 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 CABYRP1-201ENST00000465493 1045 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL3A1P02461 AC093663.2-201ENST00000484625 313 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AP002812.1-201ENST00000495378 474 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC5.32□□□□□ -1.56
COL3A1P02461 AC109927.2-201ENST00000506416 303 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL3A1P02461 AC108157.1-201ENST00000510511 539 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 MTCYBP37-201ENST00000510642 1133 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 OR5BM1P-201ENST00000512021 366 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 NDUFB4P12-201ENST00000513465 390 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 SNORA3.4-201ENST00000515969 96 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 MRPS36P3-201ENST00000519284 130 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC109635.6-201ENST00000525487 1113 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 AL121834.1-201ENST00000572284 509 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.32□□□□□ -1.56
COL3A1P02461 AP000919.1-202ENST00000581139 1264 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 MIR4801-201ENST00000582704 82 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC5.32□□□□□ -1.56
COL3A1P02461 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.32□□□□□ -1.56
COL3A1P02461 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC5.32□□□□□ -1.56
COL3A1P02461 AC039056.2-201ENST00000622261 511 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC5.32□□□□□ -1.56
COL3A1P02461 AC084035.1-201ENST00000634543 607 ntBASIC5.32□□□□□ -1.56
COL3A1P02461 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
COL3A1P02461 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 AC099786.3-201ENST00000565735 1410 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms