Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.53□□□□□ -1.85
VPS29Q9UBQ0 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 U3.15-201ENST00000365398 212 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 SNORA11B-201ENST00000408175 129 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 MTND2P15-201ENST00000418575 892 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC006989.1-201ENST00000427212 131 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC022336.1-201ENST00000475510 337 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 NPM1P17-201ENST00000479221 602 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 RN7SKP141-201ENST00000516167 338 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC087499.8-201ENST00000578406 226 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC090912.3-201ENST00000609775 533 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC006946.3-201ENST00000609791 756 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AL732618.1-201ENST00000623251 301 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 SAGE2P-201ENST00000420011 2126 ntBASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS29Q9UBQ0 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 EXOC5P1-201ENST00000510543 1969 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 RNU6-283P-201ENST00000364788 107 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 Y_RNA.625-201ENST00000411256 107 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AL365396.1-201ENST00000430854 671 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AC010655.1-201ENST00000449336 292 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 SNRPGP5-201ENST00000456003 220 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 USP9YP5-201ENST00000511770 630 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AC093853.1-201ENST00000515689 483 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AL109741.3-201ENST00000561748 592 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AC020910.2-201ENST00000603635 610 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AL049844.2-201ENST00000604280 628 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 RNU1-30P-201ENST00000606575 163 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 AC016957.2-201ENST00000616998 848 ntBASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS29Q9UBQ0 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 Y_RNA.62-201ENST00000362840 99 ntBASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 AL139247.1-201ENST00000422768 325 ntBASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 NPM1P24-201ENST00000428039 894 ntBASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 AC004975.1-201ENST00000428733 208 ntBASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 AL645931.1-201ENST00000439737 410 ntBASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 AL133162.1-201ENST00000463228 453 ntBASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 AC018635.1-201ENST00000468292 1030 ntBASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 GAPDHP36-201ENST00000480688 918 ntBASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 SNORA70.14-201ENST00000516205 110 ntBASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS29Q9UBQ0 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms