Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 UBE2V1P3-201ENST00000439651 417 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CDY12P-201ENST00000440679 1015 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AC114495.1-201ENST00000441274 436 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AL592437.1-201ENST00000443781 492 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 GEMIN8P3-201ENST00000445417 720 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CDY13P-201ENST00000445813 1015 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AL359073.1-201ENST00000448036 403 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 EIF4A1P11-201ENST00000451239 222 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CDY23P-201ENST00000451661 1014 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 RN7SL691P-201ENST00000494487 301 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 SUMO2P5-201ENST00000506790 245 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 SLC25A15P5-201ENST00000508033 253 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 ATP1B1P1-201ENST00000509767 915 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AC119751.1-201ENST00000513357 765 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 IGKV2-36-201ENST00000519999 223 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 COX6B1P6-201ENST00000522347 255 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 OR8I1P-201ENST00000529291 931 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CYCSP28-201ENST00000534284 321 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 PDCD5P1-201ENST00000543528 309 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 DYNLL1P4-201ENST00000549314 266 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AC090312.2-201ENST00000582687 378 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AC123768.4-201ENST00000616244 701 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AC023509.5-201ENST00000617434 807 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AC007546.2-201ENST00000623996 360 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CDRT1-208ENST00000630868 794 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 ASNSP1-201ENST00000518311 1939 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AL451142.2-201ENST00000429076 2090 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.21□□□□□ -1.73
CCDC3Q9BQI4 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.21□□□□□ -1.73
CCDC3Q9BQI4 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
CCDC3Q9BQI4 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 RNU1-44P-201ENST00000384453 163 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 MFSD13B-201ENST00000420133 1290 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 RPL23AP71-201ENST00000470966 469 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 HPRT1P2-201ENST00000505250 544 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 RNA5SP446-201ENST00000515955 82 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 RNA5SP49-201ENST00000516450 115 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC008562.1-201ENST00000521763 330 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC010306.1-201ENST00000523223 1117 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 OR5BC1P-201ENST00000529327 739 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC090330.1-201ENST00000588646 764 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AL022067.1-201ENST00000602426 454 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC090181.2-201ENST00000602975 672 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC069431.2-201ENST00000604149 1099 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 Z98200.1-201ENST00000607298 470 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC084824.4-201ENST00000620106 731 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC112484.5-201ENST00000624189 228 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC010608.3-201ENST00000625048 527 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 ASNSP1-204ENST00000641977 1664 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 AC092162.3-201ENST00000624511 1624 ntBASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CCDC3Q9BQI4 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 150.9 ms