Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
FOXF1Q12946 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXF1Q12946 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXF1Q12946 AC233968.1-201ENST00000611212 1300 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
FOXF1Q12946 CR381670.1-201ENST00000624291 1693 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXF1Q12946 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
FOXF1Q12946 AL359837.1-201ENST00000381357 287 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 SNORA5A-201ENST00000384111 134 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 AC245054.1-201ENST00000420944 258 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 RPS26P47-201ENST00000427219 348 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 MTCO1P51-201ENST00000427672 1060 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 AL133547.1-201ENST00000448546 220 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXF1Q12946 MTND6P32-201ENST00000457611 483 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 FTH1P2-201ENST00000466086 412 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 NPM1P17-201ENST00000479221 602 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 AC104619.4-201ENST00000510773 249 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 TRMT10BP1-201ENST00000519377 943 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 RANP9-201ENST00000519957 271 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXF1Q12946 AC034105.4-201ENST00000568304 277 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXF1Q12946 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXF1Q12946 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXF1Q12946 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXF1Q12946 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXF1Q12946 AC023813.4-201ENST00000607580 580 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXF1Q12946 CR392039.5-201ENST00000623201 510 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 AL732618.1-201ENST00000623251 301 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXF1Q12946 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXF1Q12946 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXF1Q12946 AC007342.7-201ENST00000624610 2337 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 AC007823.1-201ENST00000569932 1566 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.28□□□□□ -1.88
FOXF1Q12946 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.89
FOXF1Q12946 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXF1Q12946 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXF1Q12946 AC007656.2-201ENST00000624902 4547 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXF1Q12946 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXF1Q12946 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXF1Q12946 RNU6-1331P-201ENST00000363658 106 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 MTHFD2P2-201ENST00000407725 247 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 RAB9AP3-201ENST00000412737 573 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXF1Q12946 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXF1Q12946 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXF1Q12946 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXF1Q12946 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXF1Q12946 RPS6P12-201ENST00000432491 726 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXF1Q12946 SKP1P1-201ENST00000438081 489 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 CDC27P1-201ENST00000445384 715 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 RAB9AP1-201ENST00000449393 573 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXF1Q12946 MTCO3P20-201ENST00000454926 688 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AC005229.2-201ENST00000456995 399 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
FOXF1Q12946 AC018635.1-201ENST00000468292 1030 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AC092045.1-201ENST00000495716 1231 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AC020593.1-201ENST00000507399 299 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 USP9YP5-201ENST00000511770 630 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXF1Q12946 RN7SKP18-201ENST00000516005 275 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 RNU1-95P-201ENST00000516357 160 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 SNORA70.18-201ENST00000516696 98 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 RNU1-128P-201ENST00000516704 160 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC3.27□□□□□ -1.89
FOXF1Q12946 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXF1Q12946 EIF4EP5-201ENST00000528228 640 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC3.27□□□□□ -1.89
FOXF1Q12946 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.27□□□□□ -1.89
FOXF1Q12946 AL109741.3-201ENST00000561748 592 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXF1Q12946 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXF1Q12946 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.27□□□□□ -1.89
FOXF1Q12946 AC115621.1-201ENST00000604653 858 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AC006077.1-201ENST00000604746 343 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AL135786.2-201ENST00000608422 615 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AC067852.7-201ENST00000623270 535 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 AL732372.2-225ENST00000642124 456 ntBASIC3.27□□□□□ -1.89
FOXF1Q12946 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXF1Q12946 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
FOXF1Q12946 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXF1Q12946 AL451142.2-201ENST00000429076 2090 ntBASIC3.26□□□□□ -1.89
FOXF1Q12946 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.26□□□□□ -1.89
FOXF1Q12946 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
FOXF1Q12946 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC3.26□□□□□ -1.89
FOXF1Q12946 SNORD9-201ENST00000362566 104 ntBASIC3.26□□□□□ -1.89
FOXF1Q12946 RNU6-283P-201ENST00000364788 107 ntBASIC3.26□□□□□ -1.89
FOXF1Q12946 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
FOXF1Q12946 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXF1Q12946 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
FOXF1Q12946 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXF1Q12946 RPL5P19-201ENST00000404228 893 ntBASIC3.26□□□□□ -1.89
FOXF1Q12946 AC009237.5-201ENST00000414271 501 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms