Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC4.85□□□□□ -1.63
BDNFP23560 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.85□□□□□ -1.63
BDNFP23560 NDUFA5P7-201ENST00000452914 242 ntBASIC4.85□□□□□ -1.63
BDNFP23560 ISCUP1-201ENST00000454451 448 ntBASIC4.85□□□□□ -1.63
BDNFP23560 AC013356.1-201ENST00000489027 564 ntBASIC4.85□□□□□ -1.63
BDNFP23560 AC020890.1-201ENST00000491837 504 ntBASIC4.85□□□□□ -1.63
BDNFP23560 ARL4AP1-201ENST00000503220 705 ntBASIC4.85□□□□□ -1.63
BDNFP23560 ATP1B1P1-201ENST00000509767 915 ntBASIC4.85□□□□□ -1.63
BDNFP23560 AC092593.2-201ENST00000513866 913 ntBASIC4.85□□□□□ -1.63
BDNFP23560 MTCO3P27-201ENST00000514397 196 ntBASIC4.85□□□□□ -1.63
BDNFP23560 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.85□□□□□ -1.63
BDNFP23560 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.85□□□□□ -1.63
BDNFP23560 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
BDNFP23560 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
BDNFP23560 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
BDNFP23560 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.85□□□□□ -1.63
BDNFP23560 RFPL1S-203ENST00000539579 330 ntBASIC4.85□□□□□ -1.63
BDNFP23560 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.85□□□□□ -1.63
BDNFP23560 CBX3P5-201ENST00000552017 521 ntBASIC4.85□□□□□ -1.63
BDNFP23560 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.85□□□□□ -1.63
BDNFP23560 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.85□□□□□ -1.63
BDNFP23560 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC4.85□□□□□ -1.63
BDNFP23560 AC107954.1-201ENST00000565906 727 ntBASIC4.85□□□□□ -1.63
BDNFP23560 AC012182.1-201ENST00000570133 895 ntBASIC4.85□□□□□ -1.63
BDNFP23560 AC008782.1-201ENST00000603386 430 ntBASIC4.85□□□□□ -1.63
BDNFP23560 MIR378J-201ENST00000611988 109 ntBASIC4.85□□□□□ -1.63
BDNFP23560 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.85□□□□□ -1.63
BDNFP23560 AC015871.5-202ENST00000623252 701 ntBASIC4.85□□□□□ -1.63
BDNFP23560 AL512506.2-201ENST00000624472 458 ntBASIC4.85□□□□□ -1.63
BDNFP23560 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
BDNFP23560 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.85□□□□□ -1.63
BDNFP23560 RAD17P1-201ENST00000418130 2042 ntBASIC4.85□□□□□ -1.63
BDNFP23560 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.85□□□□□ -1.63
BDNFP23560 MARK2P15-201ENST00000432204 2186 ntBASIC4.85□□□□□ -1.63
BDNFP23560 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
BDNFP23560 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.85□□□□□ -1.63
BDNFP23560 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
BDNFP23560 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
BDNFP23560 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.84□□□□□ -1.63
BDNFP23560 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.84□□□□□ -1.63
BDNFP23560 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
BDNFP23560 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
BDNFP23560 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
BDNFP23560 OR56B2P-202ENST00000641377 2453 ntBASIC4.84□□□□□ -1.63
BDNFP23560 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.84□□□□□ -1.63
BDNFP23560 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
BDNFP23560 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.84□□□□□ -1.63
BDNFP23560 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
BDNFP23560 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
BDNFP23560 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
BDNFP23560 AC126755.2-208ENST00000327792 462 ntBASIC4.84□□□□□ -1.63
BDNFP23560 AC138969.1-213ENST00000331436 462 ntBASIC4.84□□□□□ -1.63
BDNFP23560 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
BDNFP23560 RNVU1-3-201ENST00000364313 161 ntBASIC4.84□□□□□ -1.63
BDNFP23560 RNU6-335P-201ENST00000364563 113 ntBASIC4.84□□□□□ -1.63
BDNFP23560 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
BDNFP23560 MIR607-201ENST00000385241 96 ntBASIC4.84□□□□□ -1.63
BDNFP23560 RPL31P1-201ENST00000398116 372 ntBASIC4.84□□□□□ -1.63
BDNFP23560 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.84□□□□□ -1.63
BDNFP23560 RPL7AP25-201ENST00000423357 805 ntBASIC4.84□□□□□ -1.63
BDNFP23560 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.84□□□□□ -1.63
BDNFP23560 NMNAT1P2-201ENST00000435192 860 ntBASIC4.84□□□□□ -1.63
BDNFP23560 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.84□□□□□ -1.63
BDNFP23560 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.84□□□□□ -1.63
BDNFP23560 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC4.84□□□□□ -1.63
BDNFP23560 NF1P3-201ENST00000457709 450 ntBASIC4.84□□□□□ -1.63
BDNFP23560 RPL31P13-201ENST00000484151 370 ntBASIC4.84□□□□□ -1.63
BDNFP23560 CEACAMP10-202ENST00000495431 496 ntBASIC4.84□□□□□ -1.63
BDNFP23560 AC091860.1-201ENST00000505723 432 ntBASIC4.84□□□□□ -1.63
BDNFP23560 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
BDNFP23560 RNA5SP135-201ENST00000517019 125 ntBASIC4.84□□□□□ -1.63
BDNFP23560 RN7SL435P-201ENST00000584418 282 ntBASIC4.84□□□□□ -1.63
BDNFP23560 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.84□□□□□ -1.63
BDNFP23560 AP003476.1-201ENST00000623984 516 ntBASIC4.84□□□□□ -1.63
BDNFP23560 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.84□□□□□ -1.63
BDNFP23560 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
BDNFP23560 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
BDNFP23560 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.84□□□□□ -1.64
BDNFP23560 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.64
BDNFP23560 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.83□□□□□ -1.64
BDNFP23560 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
BDNFP23560 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
BDNFP23560 AC108751.5-201ENST00000492880 1336 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AL627171.1-201ENST00000618845 1308 ntBASIC4.83□□□□□ -1.64
BDNFP23560 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
BDNFP23560 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
BDNFP23560 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
BDNFP23560 RNA5SP447-201ENST00000363749 119 ntBASIC4.83□□□□□ -1.64
BDNFP23560 OR1L1-202ENST00000373686 1083 ntBASIC4.83□□□□□ -1.64
BDNFP23560 RNU6-921P-201ENST00000384361 107 ntBASIC4.83□□□□□ -1.64
BDNFP23560 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
BDNFP23560 RPL7P27-201ENST00000403775 720 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AL592291.1-201ENST00000403830 352 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AL121834.1-202ENST00000404494 277 ntBASIC4.83□□□□□ -1.64
BDNFP23560 RPL36AP10-201ENST00000421785 322 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.83□□□□□ -1.64
BDNFP23560 GTF2IP2-201ENST00000424290 697 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.83□□□□□ -1.64
BDNFP23560 RPS12P10-201ENST00000427031 377 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms