Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 RPS7P9-201ENST00000414704 586 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 AC233981.1-201ENST00000423224 461 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 RPL7AP25-201ENST00000423357 805 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 RPL21P43-201ENST00000425440 472 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 RPL6P9-201ENST00000466502 859 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS28Q9UK41 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 AP001207.1-201ENST00000524051 481 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 MTCYBP28-201ENST00000566728 1132 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 MIR4666A-201ENST00000580160 79 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
VPS28Q9UK41 RPL26P30-202ENST00000602923 645 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 AL391834.2-201ENST00000609982 546 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 AC099654.8-201ENST00000637757 681 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS28Q9UK41 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS28Q9UK41 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.65□□□□□ -1.67
VPS28Q9UK41 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS28Q9UK41 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS28Q9UK41 RNA5SP447-201ENST00000363749 119 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 RNA5SP28-201ENST00000363841 119 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS28Q9UK41 MIR141-201ENST00000384975 95 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 RNU6-575P-201ENST00000411326 105 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS28Q9UK41 RPS12P23-201ENST00000419579 400 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 RPS27AP7-201ENST00000422792 455 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 RWDD4P2-201ENST00000426392 563 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 RPL36P19-201ENST00000430744 301 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 RPL7P59-201ENST00000447700 943 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 Z99714.1-201ENST00000450463 807 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 BX276092.4-201ENST00000452056 248 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 HMGN3P1-201ENST00000453847 193 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS28Q9UK41 RPL21P126-201ENST00000470049 478 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 GAPDHP39-201ENST00000481866 979 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC013356.1-201ENST00000489027 564 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC119751.4-201ENST00000507498 357 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC015795.1-201ENST00000513669 327 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 RN7SKP277-201ENST00000516895 283 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 C1GALT1P3-201ENST00000522049 819 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 OR8K4P-201ENST00000534608 872 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 OR1AB1P-201ENST00000585564 761 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 RPL7P50-201ENST00000600588 727 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 AL022067.1-201ENST00000602426 454 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC073387.2-201ENST00000604797 784 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 MIR7154-201ENST00000620673 73 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC124312.6-202ENST00000623624 418 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 AP003485.1-201ENST00000625093 753 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC055839.1-201ENST00000634467 498 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC009452.1-201ENST00000640823 606 ntBASIC4.64□□□□□ -1.67
VPS28Q9UK41 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
VPS28Q9UK41 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS28Q9UK41 AC125257.1-201ENST00000560400 2930 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AL672167.1-203ENST00000641299 2975 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 OR51H2P-202ENST00000641424 3046 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC139713.2-214ENST00000642059 1811 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 MAPK10-303ENST00000641324 3959 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS28Q9UK41 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS28Q9UK41 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 RNU6-925P-201ENST00000384629 104 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 AL078604.1-201ENST00000404609 466 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms