Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AGGF1P8-201ENST00000562979 1000 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 MAGOH2P-202ENST00000584384 429 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 BNIP3P8-201ENST00000597863 560 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AL133338.2-201ENST00000604292 736 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC090186.1-201ENST00000605991 572 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AL357080.1-201ENST00000617394 239 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 MIR6864-201ENST00000617935 70 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AP002907.1-201ENST00000606361 1430 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 MTND5P28-201ENST00000438005 1594 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 RN7SKP160-201ENST00000363804 340 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 RNU5A-6P-201ENST00000384136 116 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 RNA5SP187-201ENST00000384400 119 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 MIR323B-201ENST00000385269 82 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 TANK-206ENST00000406287 875 ntTSL 5 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 RN7SKP266-201ENST00000410232 287 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 Y_RNA.598-201ENST00000410480 95 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AL121878.1-201ENST00000418638 859 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 RIMKLBP2-201ENST00000424737 654 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 TRIM60P3Y-201ENST00000432201 673 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 USP9YP12-201ENST00000450481 570 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AL033528.1-201ENST00000453780 140 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 RNU7-136P-201ENST00000458819 69 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 APOOP2-201ENST00000461561 539 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC100832.1-201ENST00000471945 383 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 OR52A4P-201ENST00000472867 958 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC138853.1-201ENST00000503549 823 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 MTND2P33-201ENST00000506452 1031 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC022447.3-201ENST00000506865 495 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 RN7SKP99-201ENST00000517028 307 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 HSPA8P13-201ENST00000523715 472 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 MTND4LP18-201ENST00000526864 291 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 OR8G3P-201ENST00000533406 921 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC016957.1-201ENST00000534895 309 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC087883.1-201ENST00000551882 391 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC087481.2-201ENST00000565492 330 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC097468.3-201ENST00000607956 456 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AL118522.2-201ENST00000616045 615 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 MIR8080-201ENST00000622224 89 ntBASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
TRIM39Q9HCM9 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
TRIM39Q9HCM9 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.46□□□□□ -1.53
TRIM39Q9HCM9 AC083899.1-201ENST00000454465 3819 ntBASIC5.46□□□□□ -1.53
TRIM39Q9HCM9 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.53
TRIM39Q9HCM9 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.53
TRIM39Q9HCM9 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.46□□□□□ -1.53
TRIM39Q9HCM9 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 RPL23AP57-201ENST00000332361 466 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms