Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS35Q96QK1 MAPK10-253ENST00000641010 4072 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS35Q96QK1 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS35Q96QK1 SNORA60-201ENST00000362396 134 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 TATDN1P1-201ENST00000414123 891 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS35Q96QK1 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS35Q96QK1 RPL7P4-203ENST00000430239 730 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC091390.1-201ENST00000433904 331 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC006011.1-201ENST00000442758 349 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 RPL37P3-201ENST00000456825 293 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 NPM1P17-201ENST00000479221 602 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 RPS26P15-201ENST00000488067 348 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 OR5M7P-201ENST00000526140 972 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 KATNBL1P5-201ENST00000605015 517 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 AL591034.3-201ENST00000605511 685 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 HMGB1P50-201ENST00000605814 607 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC006946.3-201ENST00000609791 756 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC008785.1-201ENST00000624475 456 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
VPS35Q96QK1 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS35Q96QK1 HSPA8P19-201ENST00000505359 1517 ntBASIC4.09□□□□□ -1.75
VPS35Q96QK1 AC022893.2-201ENST00000564832 3296 ntBASIC4.09□□□□□ -1.76
VPS35Q96QK1 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.76
VPS35Q96QK1 AC018555.1-201ENST00000567548 1980 ntBASIC4.09□□□□□ -1.76
VPS35Q96QK1 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
VPS35Q96QK1 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS35Q96QK1 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS35Q96QK1 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS35Q96QK1 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS35Q96QK1 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 OR11H4-201ENST00000315409 1082 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 AL121657.1-201ENST00000327215 531 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 AL138878.1-201ENST00000405131 347 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 OR8G2P-201ENST00000412796 908 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 RPS27P5-201ENST00000444247 244 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 AC114755.5-201ENST00000447760 831 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 AL645939.1-201ENST00000453429 797 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS35Q96QK1 RPL38P1-201ENST00000460914 211 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 RPL21P71-201ENST00000465598 459 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 RN7SL585P-201ENST00000470538 280 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 RPL23AP71-201ENST00000470966 469 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 AC006517.1-201ENST00000480485 328 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 FTH1P24-201ENST00000503502 462 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 AC020593.1-201ENST00000507399 299 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 CBX3P5-201ENST00000552017 521 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS35Q96QK1 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 ATE1-AS1-202ENST00000636460 506 ntBASIC4.08□□□□□ -1.76
VPS35Q96QK1 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS35Q96QK1 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS35Q96QK1 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS35Q96QK1 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS35Q96QK1 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC007529.1-201ENST00000418574 2178 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms