Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SETP14-201ENST00000497538 873 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC093325.1-201ENST00000508378 326 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 RNA5SP76-201ENST00000516277 87 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 RNA5SP164-201ENST00000516533 110 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 NPM1P47-201ENST00000560843 856 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC005726.4-201ENST00000582858 458 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AC004696.1-201ENST00000614345 607 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 AP005019.3-201ENST00000620418 560 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 RNA5SP196-201ENST00000625967 102 ntBASIC2.15□□□□□ -2.07
LINC00643Q86TS7 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.15□□□□□ -2.07
LINC00643Q86TS7 NMD3P1-201ENST00000439704 1488 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 FAM35BP-202ENST00000497389 3337 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 MTND4P34-201ENST00000572715 1371 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 RN7SKP95-201ENST00000362860 303 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 MIR92A2-201ENST00000385299 75 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 RNA5SP397-201ENST00000391323 118 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 MTND4P13-201ENST00000402078 1023 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AL096701.2-201ENST00000416920 238 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 ELOCP6-201ENST00000429066 328 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 MUPP-201ENST00000438111 566 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 HMGB3P6-201ENST00000444896 598 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 RPL23AP20-201ENST00000447965 421 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 Z99127.3-201ENST00000448158 395 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 NUTF2P3-201ENST00000448540 384 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 RPL31P15-201ENST00000449770 338 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AURKAPS1-201ENST00000451805 1212 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 ELOCP12-201ENST00000458706 328 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 RN7SL98P-201ENST00000462271 300 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 RPS23P7-201ENST00000466210 444 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC010618.1-201ENST00000469924 477 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 RN7SL594P-201ENST00000470590 287 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AL139099.1-201ENST00000497398 403 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 SCARNA20.6-201ENST00000517251 106 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AP001207.2-201ENST00000519490 539 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AL121839.1-201ENST00000556233 1185 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 IGKV2OR2-8-201ENST00000558710 300 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 MIR4715-201ENST00000584117 79 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC011477.5-201ENST00000586571 259 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC098935.2-201ENST00000604222 466 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC006077.1-201ENST00000604746 343 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 SNORA62.6-201ENST00000606322 83 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC005828.7-201ENST00000607331 556 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 MIR6731-201ENST00000614863 72 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AL356490.1-201ENST00000623079 479 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC103988.1-201ENST00000566382 2177 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.14□□□□□ -2.07
LINC00643Q86TS7 SLC2A3P2-201ENST00000331747 1480 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 AC131971.1-201ENST00000332881 1482 ntBASIC2.14□□□□□ -2.07
LINC00643Q86TS7 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AL590240.1-201ENST00000334118 313 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 MT-RNR1-201ENST00000389680 954 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 RNU2-6P-201ENST00000411404 190 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 RAP1BP1-201ENST00000412709 553 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms