Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA3P55318 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA3P55318 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA3P55318 AC020915.5-201ENST00000596836 964 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA3P55318 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA3P55318 AL163642.2-201ENST00000604722 1019 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AL592494.3-201ENST00000609485 464 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC105105.5-201ENST00000622635 1294 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC073530.2-201ENST00000623987 261 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC010608.2-201ENST00000624830 470 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA3P55318 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
FOXA3P55318 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA3P55318 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC2.78□□□□□ -1.96
FOXA3P55318 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
FOXA3P55318 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC2.78□□□□□ -1.97
FOXA3P55318 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC2.77□□□□□ -1.97
FOXA3P55318 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA3P55318 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA3P55318 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
FOXA3P55318 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA3P55318 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA3P55318 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
FOXA3P55318 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA3P55318 RNA5SP447-201ENST00000363749 119 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 RNA5SP366-201ENST00000365454 123 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA3P55318 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA3P55318 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
FOXA3P55318 RNA5SP424-201ENST00000390988 115 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AC092642.1-201ENST00000392417 425 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AL034403.1-201ENST00000399414 885 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 HSPE1P26-201ENST00000405341 275 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 RNA5SP31-201ENST00000411144 127 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA3P55318 AL590806.1-201ENST00000415818 853 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA3P55318 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA3P55318 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA3P55318 UBE2V2P1-201ENST00000434717 398 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AC074367.1-201ENST00000438685 1125 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 RPL12P26-201ENST00000452430 487 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA3P55318 RPS23P7-201ENST00000466210 444 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA3P55318 AC110768.1-201ENST00000509222 400 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 NDUFA5P2-201ENST00000519723 344 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC2.77□□□□□ -1.97
FOXA3P55318 AC093331.1-201ENST00000521474 169 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 EIF4A2P3-201ENST00000525903 1055 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA3P55318 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA3P55318 AC025260.1-201ENST00000548858 430 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA3P55318 AC087888.1-201ENST00000550884 1254 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AC063949.1-201ENST00000552900 865 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA3P55318 MIR4480-201ENST00000582492 71 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA3P55318 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA3P55318 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC2.77□□□□□ -1.97
FOXA3P55318 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 AL450489.1-201ENST00000612071 468 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA3P55318 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA3P55318 AC110801.1-201ENST00000623590 212 ntBASIC2.77□□□□□ -1.97
FOXA3P55318 TEX41-280ENST00000629185 591 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA3P55318 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA3P55318 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA3P55318 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA3P55318 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA3P55318 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC2.76□□□□□ -1.97
FOXA3P55318 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA3P55318 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA3P55318 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA3P55318 AC092326.2-201ENST00000624772 1561 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA3P55318 RNA5SP235-201ENST00000365411 114 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 RNU6-805P-201ENST00000365643 106 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 AP002088.1-201ENST00000382740 395 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
FOXA3P55318 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA3P55318 AC108032.1-201ENST00000416706 207 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA3P55318 ELOCP6-201ENST00000429066 328 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 B3GNT2P1-201ENST00000434960 952 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA3P55318 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC2.76□□□□□ -1.97
FOXA3P55318 RPS7P5-201ENST00000441482 581 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA3P55318 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA3P55318 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
FOXA3P55318 ELOCP12-201ENST00000458706 328 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 TRBV8-2-201ENST00000475637 270 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 AC021205.2-201ENST00000480069 347 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 AC108475.1-201ENST00000507880 950 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC2.76□□□□□ -1.97
FOXA3P55318 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms