Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC3.9□□□□□ -1.79
COL4A4P53420 RPS24P12-201ENST00000402084 394 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AL139095.1-201ENST00000404326 391 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AC013470.3-201ENST00000420252 1194 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 USP9YP36-201ENST00000424581 829 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 OR5AW1P-201ENST00000426334 1006 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 USP9YP31-201ENST00000431405 881 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.9□□□□□ -1.79
COL4A4P53420 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AC017099.1-201ENST00000448261 1028 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AC098824.1-201ENST00000453565 980 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 SNORD105B-201ENST00000458770 79 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AP000942.1-201ENST00000463969 747 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AL136126.1-201ENST00000473603 402 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AC006445.1-201ENST00000491925 405 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 SUMO2P20-201ENST00000520803 283 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC3.9□□□□□ -1.79
COL4A4P53420 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.9□□□□□ -1.79
COL4A4P53420 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.9□□□□□ -1.79
COL4A4P53420 AC092747.2-201ENST00000545069 983 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AC122134.1-202ENST00000569111 1201 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
COL4A4P53420 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.9□□□□□ -1.79
COL4A4P53420 AC006077.1-201ENST00000604746 343 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AL118556.2-201ENST00000614375 824 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AL139089.1-201ENST00000620372 975 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AC006386.2-201ENST00000624491 75 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 AC012005.1-201ENST00000624575 75 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A4P53420 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
COL4A4P53420 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A4P53420 AC092111.2-201ENST00000611627 1414 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A4P53420 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.89□□□□□ -1.79
COL4A4P53420 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A4P53420 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.89□□□□□ -1.79
COL4A4P53420 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.89□□□□□ -1.79
COL4A4P53420 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.89□□□□□ -1.79
COL4A4P53420 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A4P53420 SDCBPP2-201ENST00000424643 885 ntBASIC3.89□□□□□ -1.79
COL4A4P53420 AL356535.1-201ENST00000440335 398 ntBASIC3.89□□□□□ -1.79
COL4A4P53420 AGGF1P3-201ENST00000493675 1213 ntBASIC3.89□□□□□ -1.79
COL4A4P53420 AC069306.1-201ENST00000507006 843 ntBASIC3.89□□□□□ -1.79
COL4A4P53420 PHBP14-201ENST00000512887 367 ntBASIC3.89□□□□□ -1.79
COL4A4P53420 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC3.89□□□□□ -1.79
COL4A4P53420 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC3.89□□□□□ -1.79
COL4A4P53420 AC009948.4-201ENST00000604692 675 ntBASIC3.89□□□□□ -1.79
COL4A4P53420 AL355816.2-201ENST00000610049 647 ntBASIC3.89□□□□□ -1.79
COL4A4P53420 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A4P53420 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A4P53420 AC118273.1-201ENST00000525324 3006 ntBASIC3.89□□□□□ -1.79
COL4A4P53420 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.89□□□□□ -1.79
COL4A4P53420 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A4P53420 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A4P53420 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL4A4P53420 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL4A4P53420 RNA5SP322-201ENST00000363617 119 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 BMS1P3-201ENST00000372011 932 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL4A4P53420 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.88□□□□□ -1.79
COL4A4P53420 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
COL4A4P53420 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.88□□□□□ -1.79
COL4A4P53420 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.88□□□□□ -1.79
COL4A4P53420 RPF2P1-201ENST00000424137 906 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL4A4P53420 AC025750.2-201ENST00000442609 450 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 RPL23AP71-201ENST00000470966 469 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 AC037198.2-201ENST00000478845 733 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC3.88□□□□□ -1.79
COL4A4P53420 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.88□□□□□ -1.79
COL4A4P53420 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.88□□□□□ -1.79
COL4A4P53420 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.88□□□□□ -1.79
COL4A4P53420 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.88□□□□□ -1.79
COL4A4P53420 EIF4BP1-201ENST00000554881 351 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.88□□□□□ -1.79
COL4A4P53420 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.88□□□□□ -1.79
COL4A4P53420 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC3.88□□□□□ -1.79
COL4A4P53420 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.88□□□□□ -1.79
COL4A4P53420 AC233280.2-201ENST00000603917 1070 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 AL033523.1-201ENST00000605153 153 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.88□□□□□ -1.79
COL4A4P53420 AL356094.1-201ENST00000624663 1212 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 AC080188.3-201ENST00000624842 748 ntBASIC3.88□□□□□ -1.79
COL4A4P53420 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC3.88□□□□□ -1.79
COL4A4P53420 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.88□□□□□ -1.79
COL4A4P53420 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL4A4P53420 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL4A4P53420 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.88□□□□□ -1.79
COL4A4P53420 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
COL4A4P53420 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
COL4A4P53420 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL4A4P53420 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A4P53420 RNU1-18P-201ENST00000363062 164 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 MTND4LP20-201ENST00000402379 270 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A4P53420 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.87□□□□□ -1.79
COL4A4P53420 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A4P53420 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC3.87□□□□□ -1.79
COL4A4P53420 AL645931.1-201ENST00000439737 410 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 NANOGNBP1-201ENST00000448444 480 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms