Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SDC3O75056 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.1□□□□□ -1.75
SDC3O75056 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SDC3O75056 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
SDC3O75056 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.1□□□□□ -1.75
SDC3O75056 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SDC3O75056 AP000357.1-201ENST00000409926 1165 ntBASIC4.1□□□□□ -1.75
SDC3O75056 RN7SKP159-201ENST00000410657 292 ntBASIC4.1□□□□□ -1.75
SDC3O75056 AL451062.2-201ENST00000427515 271 ntBASIC4.1□□□□□ -1.75
SDC3O75056 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.1□□□□□ -1.75
SDC3O75056 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.1□□□□□ -1.75
SDC3O75056 RPL30P11-201ENST00000495304 339 ntBASIC4.1□□□□□ -1.75
SDC3O75056 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.1□□□□□ -1.75
SDC3O75056 AC025445.1-201ENST00000502728 300 ntBASIC4.1□□□□□ -1.75
SDC3O75056 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SDC3O75056 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SDC3O75056 OR4A2P-201ENST00000527276 913 ntBASIC4.1□□□□□ -1.75
SDC3O75056 AC006064.5-201ENST00000541782 248 ntBASIC4.1□□□□□ -1.75
SDC3O75056 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.1□□□□□ -1.75
SDC3O75056 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.1□□□□□ -1.75
SDC3O75056 AL121834.1-201ENST00000572284 509 ntBASIC4.1□□□□□ -1.75
SDC3O75056 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.1□□□□□ -1.75
SDC3O75056 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.1□□□□□ -1.75
SDC3O75056 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SDC3O75056 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.1□□□□□ -1.75
SDC3O75056 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.1□□□□□ -1.75
SDC3O75056 AC018618.2-201ENST00000604770 446 ntBASIC4.1□□□□□ -1.75
SDC3O75056 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.1□□□□□ -1.75
SDC3O75056 AC026368.1-201ENST00000614934 690 ntBASIC4.1□□□□□ -1.75
SDC3O75056 MIR6500-201ENST00000622700 86 ntBASIC4.1□□□□□ -1.75
SDC3O75056 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.1□□□□□ -1.75
SDC3O75056 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
SDC3O75056 AL512283.1-201ENST00000606756 1384 ntBASIC4.1□□□□□ -1.75
SDC3O75056 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.1□□□□□ -1.75
SDC3O75056 AP001002.1-201ENST00000625148 1513 ntBASIC4.1□□□□□ -1.75
SDC3O75056 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SDC3O75056 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.1□□□□□ -1.75
SDC3O75056 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SDC3O75056 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SDC3O75056 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
SDC3O75056 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SDC3O75056 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SDC3O75056 RNU6-1279P-201ENST00000383917 103 ntBASIC4.09□□□□□ -1.75
SDC3O75056 SNORD66.1-201ENST00000391230 76 ntBASIC4.09□□□□□ -1.75
SDC3O75056 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SDC3O75056 RNU2-72P-201ENST00000411175 163 ntBASIC4.09□□□□□ -1.75
SDC3O75056 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 TATDN1P1-201ENST00000414123 891 ntBASIC4.09□□□□□ -1.75
SDC3O75056 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.09□□□□□ -1.75
SDC3O75056 LINC01347-201ENST00000417964 355 ntBASIC4.09□□□□□ -1.75
SDC3O75056 AC004552.1-201ENST00000419089 348 ntBASIC4.09□□□□□ -1.75
SDC3O75056 HMGB3P5-201ENST00000428894 612 ntBASIC4.09□□□□□ -1.75
SDC3O75056 RPL7P29-201ENST00000437151 728 ntBASIC4.09□□□□□ -1.75
SDC3O75056 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 RPS26P3-201ENST00000470205 348 ntBASIC4.09□□□□□ -1.75
SDC3O75056 RPL23AP2-201ENST00000471227 466 ntBASIC4.09□□□□□ -1.75
SDC3O75056 AC090543.2-201ENST00000483963 348 ntBASIC4.09□□□□□ -1.75
SDC3O75056 AC004057.1-201ENST00000485827 348 ntBASIC4.09□□□□□ -1.75
SDC3O75056 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.09□□□□□ -1.75
SDC3O75056 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 RNU6-1102P-201ENST00000516149 96 ntBASIC4.09□□□□□ -1.75
SDC3O75056 RNU6-467P-201ENST00000517027 110 ntBASIC4.09□□□□□ -1.75
SDC3O75056 CIR1P1-201ENST00000524055 1133 ntBASIC4.09□□□□□ -1.75
SDC3O75056 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 AC120057.2-201ENST00000571520 271 ntBASIC4.09□□□□□ -1.75
SDC3O75056 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.09□□□□□ -1.75
SDC3O75056 AC008638.3-201ENST00000603341 463 ntBASIC4.09□□□□□ -1.75
SDC3O75056 AC011374.2-201ENST00000607135 526 ntBASIC4.09□□□□□ -1.75
SDC3O75056 AL445493.3-201ENST00000619568 477 ntBASIC4.09□□□□□ -1.75
SDC3O75056 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
SDC3O75056 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
SDC3O75056 MIR6715B-201ENST00000637172 77 ntBASIC4.09□□□□□ -1.75
SDC3O75056 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.09□□□□□ -1.75
SDC3O75056 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
SDC3O75056 AC134882.1-201ENST00000603738 1676 ntBASIC4.09□□□□□ -1.76
SDC3O75056 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
SDC3O75056 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.08□□□□□ -1.76
SDC3O75056 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
SDC3O75056 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
SDC3O75056 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 RNU6-98P-201ENST00000384173 107 ntBASIC4.08□□□□□ -1.76
SDC3O75056 MIR93-201ENST00000385024 80 ntBASIC4.08□□□□□ -1.76
SDC3O75056 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 TPT1P2-201ENST00000413105 503 ntBASIC4.08□□□□□ -1.76
SDC3O75056 TCEA1P4-201ENST00000415066 844 ntBASIC4.08□□□□□ -1.76
SDC3O75056 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 AC115285.1-201ENST00000424879 736 ntBASIC4.08□□□□□ -1.76
SDC3O75056 AL445584.1-201ENST00000431451 330 ntBASIC4.08□□□□□ -1.76
SDC3O75056 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms