Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
TM9SF3Q9HD45 MIR153-1-201ENST00000384914 90 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 ATP5F1P3-201ENST00000397213 657 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 MTCO1P57-201ENST00000432182 261 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 HLA-N-201ENST00000437516 135 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 TPTE2P6-202ENST00000445572 1007 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 RPL7P22-201ENST00000466005 733 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 VN1R105P-201ENST00000486595 910 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AP002812.1-201ENST00000495378 474 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AL109741.3-201ENST00000561748 592 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 CYP4A43P-201ENST00000568156 121 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 CDRT1-208ENST00000630868 794 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 OR8B1P-202ENST00000641132 1178 ntBASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TM9SF3Q9HD45 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 MARK2P15-201ENST00000432204 2186 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 SNORA62.3-201ENST00000365110 153 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 MIR513A2-201ENST00000385249 127 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 RNU11-4P-201ENST00000391149 133 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 DHFRP5-201ENST00000406944 564 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 CYCSP19-201ENST00000411715 316 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 YWHAEP5-201ENST00000431545 765 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 RPEP2-201ENST00000432149 701 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AL356276.2-201ENST00000435919 558 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 HMGB1P5-202ENST00000451497 985 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC079804.1-201ENST00000461922 436 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC034236.1-201ENST00000469891 373 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC139783.2-201ENST00000504847 1145 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 IFITM8P-201ENST00000522529 394 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC124068.1-201ENST00000563131 678 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 CCDC58P3-201ENST00000590792 430 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AL049737.1-201ENST00000413920 1403 ntBASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
TM9SF3Q9HD45 AC011266.1-201ENST00000624119 3569 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AC022031.1-201ENST00000585985 2593 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 RAC1P3-201ENST00000416129 580 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 RPS29P7-201ENST00000439662 171 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AC091959.2-201ENST00000477363 321 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AC010460.1-201ENST00000507087 466 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 FTH1P21-201ENST00000512179 511 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 OR5M7P-201ENST00000526140 972 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 RN7SL703P-201ENST00000578485 302 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 AL133247.2-201ENST00000603236 482 ntBASIC4.19□□□□□ -1.74
TM9SF3Q9HD45 RNA5SP108-201ENST00000605921 117 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms