Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 RNA5SP319-201ENST00000362768 119 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 ZNF603P-201ENST00000405613 487 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 RPL31P52-201ENST00000407532 367 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 OR3A2-201ENST00000408891 1076 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 HMGN1P14-201ENST00000412459 517 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 OR6D1P-201ENST00000436165 939 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 RPL23AP74-201ENST00000437246 471 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 SKP1P1-201ENST00000438081 489 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 RPL7P22-201ENST00000466005 733 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC096751.1-202ENST00000502691 1067 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 PAICSP4-201ENST00000517543 1253 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC013828.2-201ENST00000532487 235 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 OR11J2P-201ENST00000555298 907 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 RN7SL753P-201ENST00000581238 290 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC110743.1-201ENST00000584870 478 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC080013.4-201ENST00000607624 649 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC109347.2-201ENST00000610220 349 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 U6.101-201ENST00000637707 76 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC099654.12-201ENST00000639868 649 ntBASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRIM39Q9HCM9 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC097504.1-201ENST00000515103 2415 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC068870.1-201ENST00000563737 2455 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC097063.1-201ENST00000426714 1797 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 RNA5SP391-201ENST00000363456 119 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 RNU6-348P-201ENST00000384386 107 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 U3.25-201ENST00000391209 220 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 MIR1305-201ENST00000408300 86 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 Z93019.1-201ENST00000416450 973 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 USP9YP13-201ENST00000417797 480 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 B3GALNT1P1-201ENST00000420569 975 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 FNDC3CP-201ENST00000420795 1155 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC079355.1-201ENST00000421770 223 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 COX6CP15-201ENST00000426313 211 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 RPL12P18-201ENST00000437175 325 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 snoU109.1-201ENST00000459339 135 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 SNORD42A-201ENST00000459584 64 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 OR9M1P-201ENST00000459641 921 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 RN7SL51P-201ENST00000468230 285 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC005726.1-201ENST00000494679 427 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 RPS17P5-201ENST00000498293 408 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 FTH1P24-201ENST00000503502 462 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AF131216.2-201ENST00000512316 564 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 RNA5SP362-201ENST00000516048 118 ntBASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.48□□□□□ -1.53
TRIM39Q9HCM9 AC122688.1-201ENST00000541494 223 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms