Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ERCC6-202ENST00000374127 1782 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS35Q96QK1 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS35Q96QK1 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC116667.1-201ENST00000604855 2072 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS35Q96QK1 VTA1P1-201ENST00000414044 866 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC108032.1-201ENST00000416706 207 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 NIPA2P1-201ENST00000426223 976 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 MRPL50P1-201ENST00000431951 384 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 RPL7P1-201ENST00000468161 747 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 RPL7P9-201ENST00000468715 747 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 S100A11P1-201ENST00000477525 312 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 SETP12-201ENST00000514068 805 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 MIR2114-201ENST00000516645 80 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 IGKV2D-23-201ENST00000518179 286 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 IFITM8P-201ENST00000522529 394 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC025918.2-201ENST00000558683 763 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 MIR4697-201ENST00000582977 78 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC015911.5-201ENST00000587076 451 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 ABI1P1-201ENST00000603375 1120 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC064801.1-201ENST00000612025 407 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC023043.4-201ENST00000612081 449 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 uc_338.32-201ENST00000615087 172 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC010608.2-201ENST00000624830 470 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS35Q96QK1 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AC106871.1-201ENST00000568324 3102 ntBASIC4.11□□□□□ -1.75
VPS35Q96QK1 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS35Q96QK1 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS35Q96QK1 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS35Q96QK1 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS35Q96QK1 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS35Q96QK1 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS35Q96QK1 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 ENSAP1-201ENST00000392855 326 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 AL022722.2-201ENST00000402519 180 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 AP000357.1-201ENST00000409926 1165 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 AL357078.2-201ENST00000416486 427 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 AC234782.4-201ENST00000417646 1048 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 AL031736.2-201ENST00000426573 787 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 PTP4A1P3-201ENST00000433661 420 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 ELOCP11-201ENST00000436690 332 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 ELOCP16-201ENST00000444494 332 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 ARL5AP2-201ENST00000444698 533 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 AC092685.1-201ENST00000447960 1243 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 FABP3P2-201ENST00000453169 399 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 RPL30P11-201ENST00000495304 339 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 AC092045.1-201ENST00000495716 1231 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 AC093824.1-201ENST00000508796 343 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 OR4A2P-201ENST00000527276 913 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 AC110741.2-201ENST00000605278 268 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS35Q96QK1 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS35Q96QK1 AC083899.2-201ENST00000423285 1376 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS35Q96QK1 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 MARK2P15-201ENST00000432204 2186 ntBASIC4.1□□□□□ -1.75
VPS35Q96QK1 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS35Q96QK1 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
VPS35Q96QK1 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS35Q96QK1 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS35Q96QK1 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms