Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-575P-201ENST00000411326 105 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 SSR1P2-201ENST00000415208 787 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 CYCSP10-201ENST00000417973 294 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AL451142.2-201ENST00000429076 2090 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AL353597.2-202ENST00000434901 373 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 RPS29P9-201ENST00000440360 171 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AC073052.1-201ENST00000440417 714 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 PTGES3P5-201ENST00000455109 434 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 RN7SL542P-201ENST00000467147 294 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 RPL23AP44-201ENST00000482216 473 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 RPS3AP6-201ENST00000484430 795 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AC018552.3-201ENST00000567416 561 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AC017100.2-201ENST00000584628 355 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 PCF11-AS1-201ENST00000602322 1516 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AL592148.2-201ENST00000612210 372 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AC015804.1-201ENST00000622935 435 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AC087821.2-201ENST00000637086 450 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
COL28A1Q2UY09 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.59□□□□□ -1.68
COL28A1Q2UY09 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 OR51H2P-202ENST00000641424 3046 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 Y_RNA.472-201ENST00000384322 102 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 RNU6-178P-201ENST00000384631 104 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 RNA5SP372-201ENST00000390836 115 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 RPS26P8-201ENST00000393490 348 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AL590762.2-201ENST00000395798 571 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 RN7SKP247-201ENST00000411094 308 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 UQCRBP1-201ENST00000421129 336 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 FABP7P1-201ENST00000424004 391 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 OR4C10P-201ENST00000434991 931 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC084290.1-201ENST00000434995 374 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 RPL35AP21-201ENST00000437667 333 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AL353748.1-201ENST00000440753 474 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 RPL7AP61-201ENST00000443410 636 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 Z73417.1-201ENST00000447373 778 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 MRPL42P4-201ENST00000453267 443 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AL445433.1-201ENST00000457507 257 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 RPL23AP24-201ENST00000458203 385 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 RPL7P19-201ENST00000469948 618 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC006511.1-201ENST00000470614 315 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 RPS27P23-201ENST00000487608 251 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC023632.1-201ENST00000518463 375 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 MRPL49P2-201ENST00000521066 465 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC069061.3-201ENST00000582254 823 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 PCNAP1-202ENST00000595299 752 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC096553.1-201ENST00000605169 829 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AP005137.2-201ENST00000609238 400 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AC097505.1-201ENST00000610199 565 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 MFSD8-245ENST00000641743 948 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 LINC02211-204ENST00000642024 1070 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms