Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 MTND5P1-201ENST00000445440 1375 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CHD3Q12873 MIR183-201ENST00000384958 110 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 SOD2P1-201ENST00000396543 562 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 SNORA3C-201ENST00000408792 125 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.36□□□□□ -1.87
CHD3Q12873 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.36□□□□□ -1.87
CHD3Q12873 RPS3AP46-201ENST00000448352 682 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.36□□□□□ -1.87
CHD3Q12873 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.36□□□□□ -1.87
CHD3Q12873 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.36□□□□□ -1.87
CHD3Q12873 AC090819.1-201ENST00000523800 1111 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CHD3Q12873 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.36□□□□□ -1.87
CHD3Q12873 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.36□□□□□ -1.87
CHD3Q12873 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.36□□□□□ -1.87
CHD3Q12873 GTF2IP8-201ENST00000560687 584 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 AC022146.1-201ENST00000595307 847 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 AC243654.2-201ENST00000612843 443 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 MIR7975-201ENST00000619350 68 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 AC079684.1-201ENST00000621405 437 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CHD3Q12873 AC024023.1-201ENST00000624530 922 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 AP001002.2-201ENST00000625137 386 ntBASIC3.36□□□□□ -1.87
CHD3Q12873 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.36□□□□□ -1.87
CHD3Q12873 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.35□□□□□ -1.87
CHD3Q12873 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CHD3Q12873 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
CHD3Q12873 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CHD3Q12873 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CHD3Q12873 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.35□□□□□ -1.87
CHD3Q12873 RNU4-6P-201ENST00000410804 122 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 OR6C71P-201ENST00000432580 913 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 AL159987.2-201ENST00000432754 307 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.35□□□□□ -1.87
CHD3Q12873 AC009263.1-201ENST00000441193 1239 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.35□□□□□ -1.87
CHD3Q12873 AC008481.1-201ENST00000463278 396 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.35□□□□□ -1.87
CHD3Q12873 RPL21P71-201ENST00000465598 459 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 AC135999.1-201ENST00000478962 479 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.35□□□□□ -1.87
CHD3Q12873 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.35□□□□□ -1.87
CHD3Q12873 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CHD3Q12873 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.35□□□□□ -1.87
CHD3Q12873 RNU1-95P-201ENST00000516357 160 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 RNU1-128P-201ENST00000516704 160 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.35□□□□□ -1.87
CHD3Q12873 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.35□□□□□ -1.87
CHD3Q12873 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC3.35□□□□□ -1.87
CHD3Q12873 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.35□□□□□ -1.87
CHD3Q12873 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.35□□□□□ -1.87
CHD3Q12873 NPM1P47-201ENST00000560843 856 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.35□□□□□ -1.87
CHD3Q12873 AC007599.1-201ENST00000568688 1174 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.35□□□□□ -1.87
CHD3Q12873 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC3.35□□□□□ -1.87
CHD3Q12873 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.35□□□□□ -1.87
CHD3Q12873 ELOCP35-201ENST00000604289 336 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.35□□□□□ -1.87
CHD3Q12873 AC124312.6-202ENST00000623624 418 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 MAPK10-372ENST00000641954 3413 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.35□□□□□ -1.87
CHD3Q12873 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
CHD3Q12873 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CHD3Q12873 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
CHD3Q12873 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CHD3Q12873 AC083899.2-201ENST00000423285 1376 ntBASIC3.35□□□□□ -1.87
CHD3Q12873 RPS4XP5-202ENST00000449995 1334 ntBASIC3.34□□□□□ -1.87
CHD3Q12873 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CHD3Q12873 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CHD3Q12873 ATP5F1P4-201ENST00000397288 746 ntBASIC3.34□□□□□ -1.87
CHD3Q12873 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.34□□□□□ -1.87
CHD3Q12873 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.34□□□□□ -1.87
CHD3Q12873 AC093698.1-201ENST00000423843 571 ntBASIC3.34□□□□□ -1.87
CHD3Q12873 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.34□□□□□ -1.87
CHD3Q12873 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.34□□□□□ -1.87
CHD3Q12873 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.34□□□□□ -1.87
CHD3Q12873 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CHD3Q12873 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.34□□□□□ -1.87
CHD3Q12873 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.34□□□□□ -1.87
CHD3Q12873 AC017037.1-201ENST00000508460 471 ntBASIC3.34□□□□□ -1.87
CHD3Q12873 AC008802.1-201ENST00000519121 791 ntBASIC3.34□□□□□ -1.87
CHD3Q12873 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.34□□□□□ -1.87
CHD3Q12873 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CHD3Q12873 PDCL2P2-201ENST00000533651 189 ntBASIC3.34□□□□□ -1.87
CHD3Q12873 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.34□□□□□ -1.87
CHD3Q12873 GNRHR2P1-201ENST00000555315 631 ntBASIC3.34□□□□□ -1.87
CHD3Q12873 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.34□□□□□ -1.87
CHD3Q12873 SNX6P1-201ENST00000601728 1224 ntBASIC3.34□□□□□ -1.87
CHD3Q12873 MIR486-1-201ENST00000612171 68 ntBASIC3.34□□□□□ -1.87
CHD3Q12873 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CHD3Q12873 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CHD3Q12873 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CHD3Q12873 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CHD3Q12873 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
CHD3Q12873 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms