Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC6.11□□□□□ -1.43
SOX4Q06945 HMGN1P30-201ENST00000589286 268 ntBASIC6.11□□□□□ -1.43
SOX4Q06945 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.11□□□□□ -1.43
SOX4Q06945 AC006115.2-201ENST00000596823 202 ntBASIC6.11□□□□□ -1.43
SOX4Q06945 AL133255.1-201ENST00000606374 441 ntBASIC6.11□□□□□ -1.43
SOX4Q06945 AC116312.1-201ENST00000606841 314 ntBASIC6.11□□□□□ -1.43
SOX4Q06945 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC6.11□□□□□ -1.43
SOX4Q06945 AC010205.1-201ENST00000616668 449 ntBASIC6.11□□□□□ -1.43
SOX4Q06945 DLEU1_2.1-201ENST00000617920 342 ntBASIC6.11□□□□□ -1.43
SOX4Q06945 AC090527.3-201ENST00000619041 548 ntBASIC6.11□□□□□ -1.43
SOX4Q06945 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC6.11□□□□□ -1.43
SOX4Q06945 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
SOX4Q06945 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SOX4Q06945 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SOX4Q06945 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.11□□□□□ -1.43
SOX4Q06945 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.11□□□□□ -1.43
SOX4Q06945 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SOX4Q06945 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SOX4Q06945 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
SOX4Q06945 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SOX4Q06945 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
SOX4Q06945 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.11□□□□□ -1.43
SOX4Q06945 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.11□□□□□ -1.43
SOX4Q06945 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SOX4Q06945 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 AC011933.2-201ENST00000578539 2790 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 EEF1A1P42-201ENST00000613436 1331 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
SOX4Q06945 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX4Q06945 RNA5SP234-201ENST00000363916 119 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 SNORA62.2-201ENST00000364672 152 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 RPL23AP17-201ENST00000401064 499 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX4Q06945 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC6.1□□□□□ -1.43
SOX4Q06945 RAD23BP1-201ENST00000421404 1227 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AL353193.1-201ENST00000421444 268 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 EIF1P3-201ENST00000423841 334 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.1□□□□□ -1.43
SOX4Q06945 NANOGP6-201ENST00000429190 847 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 RPL7P4-203ENST00000430239 730 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 RPL31P35-201ENST00000431058 377 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 RPL23AP16-201ENST00000441715 421 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AC019185.1-201ENST00000442718 389 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX4Q06945 AL121877.1-201ENST00000453704 622 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AC002075.1-201ENST00000457396 676 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 MEMO1P3-201ENST00000459811 302 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AC096741.1-201ENST00000472250 846 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX4Q06945 UBA52P7-201ENST00000486088 380 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 RPL36AP51-201ENST00000487216 318 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 AC093278.1-201ENST00000494700 600 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX4Q06945 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC6.1□□□□□ -1.43
SOX4Q06945 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX4Q06945 NRBF2P4-201ENST00000520874 850 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 IGKV2-18-201ENST00000522607 343 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX4Q06945 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX4Q06945 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.1□□□□□ -1.43
SOX4Q06945 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC6.1□□□□□ -1.43
SOX4Q06945 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX4Q06945 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX4Q06945 MRPS21P7-201ENST00000566937 238 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX4Q06945 AC243960.4-201ENST00000600532 288 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AC007687.1-201ENST00000602704 304 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AL133338.2-201ENST00000604292 736 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AL451049.1-201ENST00000608672 497 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 AC023509.5-201ENST00000617434 807 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 PACRG-211ENST00000621363 360 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX4Q06945 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX4Q06945 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
SOX4Q06945 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
SOX4Q06945 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.1□□□□□ -1.43
SOX4Q06945 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.1□□□□□ -1.43
SOX4Q06945 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.1□□□□□ -1.43
SOX4Q06945 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SOX4Q06945 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.09□□□□□ -1.43
SOX4Q06945 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.09□□□□□ -1.43
SOX4Q06945 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
SOX4Q06945 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SOX4Q06945 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC6.09□□□□□ -1.43
SOX4Q06945 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC6.09□□□□□ -1.43
SOX4Q06945 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SOX4Q06945 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC6.09□□□□□ -1.43
SOX4Q06945 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms