Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC3.91□□□□□ -1.78
CDX1P47902 LLPHP1-201ENST00000603571 367 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AC024940.4-201ENST00000605507 246 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CDX1P47902 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CDX1P47902 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 AL157770.1-201ENST00000623049 439 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AC098679.5-201ENST00000624394 571 ntBASIC3.91□□□□□ -1.78
CDX1P47902 OR1S1-201ENST00000624470 978 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AL512506.2-201ENST00000624472 458 ntBASIC3.91□□□□□ -1.78
CDX1P47902 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 IQCB2P-201ENST00000401788 1633 ntBASIC3.91□□□□□ -1.78
CDX1P47902 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
CDX1P47902 AL122126.1-201ENST00000546905 1318 ntBASIC3.91□□□□□ -1.78
CDX1P47902 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.91□□□□□ -1.78
CDX1P47902 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.91□□□□□ -1.78
CDX1P47902 AL359922.3-201ENST00000624779 1670 ntBASIC3.9□□□□□ -1.78
CDX1P47902 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CDX1P47902 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CDX1P47902 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.9□□□□□ -1.78
CDX1P47902 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CDX1P47902 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
CDX1P47902 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
CDX1P47902 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.78
CDX1P47902 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CDX1P47902 RN7SKP95-201ENST00000362860 303 ntBASIC3.9□□□□□ -1.79
CDX1P47902 RN7SKP149-201ENST00000363008 344 ntBASIC3.9□□□□□ -1.79
CDX1P47902 RNU6-984P-201ENST00000363236 109 ntBASIC3.9□□□□□ -1.79
CDX1P47902 U3.15-201ENST00000365398 212 ntBASIC3.9□□□□□ -1.79
CDX1P47902 ENSAP1-201ENST00000392855 326 ntBASIC3.9□□□□□ -1.79
CDX1P47902 SSXP10-201ENST00000402595 565 ntBASIC3.9□□□□□ -1.79
CDX1P47902 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
CDX1P47902 RNA5SP39-201ENST00000411245 120 ntBASIC3.9□□□□□ -1.79
CDX1P47902 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC3.9□□□□□ -1.79
CDX1P47902 OR4K6P-201ENST00000416478 897 ntBASIC3.9□□□□□ -1.79
CDX1P47902 RPL31P45-201ENST00000419532 356 ntBASIC3.9□□□□□ -1.79
CDX1P47902 MTND2P9-201ENST00000422293 931 ntBASIC3.9□□□□□ -1.79
CDX1P47902 RPF2P1-201ENST00000424137 906 ntBASIC3.9□□□□□ -1.79
CDX1P47902 EIF4HP2-201ENST00000424380 563 ntBASIC3.9□□□□□ -1.79
CDX1P47902 MTCO2P23-201ENST00000425216 680 ntBASIC3.9□□□□□ -1.79
CDX1P47902 CNOT7P1-201ENST00000429006 852 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC3.9□□□□□ -1.79
CDX1P47902 ZDHHC20P1-204ENST00000435787 423 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC3.9□□□□□ -1.79
CDX1P47902 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.9□□□□□ -1.79
CDX1P47902 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC3.9□□□□□ -1.79
CDX1P47902 Z77249.1-201ENST00000444622 1175 ntBASIC3.9□□□□□ -1.79
CDX1P47902 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC3.9□□□□□ -1.79
CDX1P47902 AL031313.1-201ENST00000448435 256 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC3.9□□□□□ -1.79
CDX1P47902 DUXAP8-207ENST00000456786 622 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC3.9□□□□□ -1.79
CDX1P47902 VPS26AP1-201ENST00000483197 979 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC005726.1-201ENST00000494679 427 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC110775.1-201ENST00000513721 462 ntBASIC3.9□□□□□ -1.79
CDX1P47902 RNA5SP497-201ENST00000516081 97 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.9□□□□□ -1.79
CDX1P47902 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.9□□□□□ -1.79
CDX1P47902 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.9□□□□□ -1.79
CDX1P47902 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.9□□□□□ -1.79
CDX1P47902 CYCSP28-201ENST00000534284 321 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC3.9□□□□□ -1.79
CDX1P47902 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.9□□□□□ -1.79
CDX1P47902 TVP23CP2-201ENST00000571473 623 ntBASIC3.9□□□□□ -1.79
CDX1P47902 RN7SL339P-201ENST00000580597 296 ntBASIC3.9□□□□□ -1.79
CDX1P47902 MIR4436B2-201ENST00000581415 91 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC3.9□□□□□ -1.79
CDX1P47902 MIR4436B1-201ENST00000583272 91 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC3.9□□□□□ -1.79
CDX1P47902 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 AC068790.7-201ENST00000602347 528 ntBASIC3.9□□□□□ -1.79
CDX1P47902 GAS5-AS1-201ENST00000602767 694 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC007566.2-201ENST00000603642 413 ntBASIC3.9□□□□□ -1.79
CDX1P47902 MEMO1P5-201ENST00000604810 406 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AL009028.1-201ENST00000604895 802 ntBASIC3.9□□□□□ -1.79
CDX1P47902 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC3.9□□□□□ -1.79
CDX1P47902 AC116651.1-201ENST00000609724 556 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AL157392.4-201ENST00000609756 345 ntBASIC3.9□□□□□ -1.79
CDX1P47902 DUXAP10-204ENST00000612052 616 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC078899.5-201ENST00000612475 178 ntBASIC3.9□□□□□ -1.79
CDX1P47902 AC010975.3-201ENST00000618727 978 ntBASIC3.9□□□□□ -1.79
CDX1P47902 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.9□□□□□ -1.79
CDX1P47902 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.9□□□□□ -1.79
CDX1P47902 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CDX1P47902 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
CDX1P47902 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
CDX1P47902 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CDX1P47902 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms