Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
VCANP13611 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
VCANP13611 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
VCANP13611 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VCANP13611 Y_RNA.4-201ENST00000362333 112 ntBASIC3.56□□□□□ -1.84
VCANP13611 AL358178.1-201ENST00000407698 397 ntBASIC3.56□□□□□ -1.84
VCANP13611 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3.56□□□□□ -1.84
VCANP13611 AC126389.1-201ENST00000477436 290 ntBASIC3.56□□□□□ -1.84
VCANP13611 RPS29P26-201ENST00000477483 171 ntBASIC3.56□□□□□ -1.84
VCANP13611 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.56□□□□□ -1.84
VCANP13611 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC3.56□□□□□ -1.84
VCANP13611 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC3.56□□□□□ -1.84
VCANP13611 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VCANP13611 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.56□□□□□ -1.84
VCANP13611 SNORA62.6-201ENST00000606322 83 ntBASIC3.56□□□□□ -1.84
VCANP13611 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VCANP13611 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VCANP13611 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VCANP13611 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
VCANP13611 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.55□□□□□ -1.84
VCANP13611 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC3.55□□□□□ -1.84
VCANP13611 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.55□□□□□ -1.84
VCANP13611 AC073069.1-201ENST00000428657 441 ntBASIC3.55□□□□□ -1.84
VCANP13611 AL356535.1-201ENST00000440335 398 ntBASIC3.55□□□□□ -1.84
VCANP13611 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.55□□□□□ -1.84
VCANP13611 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 AC105227.2-201ENST00000615075 605 ntBASIC3.55□□□□□ -1.84
VCANP13611 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
VCANP13611 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.55□□□□□ -1.84
VCANP13611 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.55□□□□□ -1.84
VCANP13611 AC009963.4-201ENST00000448535 339 ntBASIC3.55□□□□□ -1.84
VCANP13611 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC3.55□□□□□ -1.84
VCANP13611 AC023389.2-201ENST00000580031 955 ntBASIC3.55□□□□□ -1.84
VCANP13611 AC095038.2-201ENST00000621464 1070 ntBASIC3.55□□□□□ -1.84
VCANP13611 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC3.55□□□□□ -1.84
VCANP13611 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
VCANP13611 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC3.55□□□□□ -1.84
VCANP13611 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 OR51C1P-202ENST00000641159 1444 ntBASIC3.55□□□□□ -1.84
VCANP13611 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.55□□□□□ -1.84
VCANP13611 EEF1A1P41-201ENST00000414667 207 ntBASIC3.55□□□□□ -1.84
VCANP13611 AC073335.1-201ENST00000427776 363 ntBASIC3.55□□□□□ -1.84
VCANP13611 AL139132.1-201ENST00000431587 344 ntBASIC3.55□□□□□ -1.84
VCANP13611 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.55□□□□□ -1.84
VCANP13611 NPM1P39-201ENST00000449818 867 ntBASIC3.55□□□□□ -1.84
VCANP13611 NDUFB9P3-201ENST00000521269 501 ntBASIC3.55□□□□□ -1.84
VCANP13611 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.55□□□□□ -1.84
VCANP13611 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC3.55□□□□□ -1.84
VCANP13611 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.55□□□□□ -1.84
VCANP13611 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VCANP13611 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VCANP13611 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
VCANP13611 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
VCANP13611 RNA5SP424-201ENST00000390988 115 ntBASIC3.54□□□□□ -1.84
VCANP13611 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VCANP13611 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.54□□□□□ -1.84
VCANP13611 AC008759.1-201ENST00000589783 983 ntBASIC3.54□□□□□ -1.84
VCANP13611 AC099063.3-201ENST00000642066 185 ntBASIC3.54□□□□□ -1.84
VCANP13611 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
VCANP13611 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
VCANP13611 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VCANP13611 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VCANP13611 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
VCANP13611 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
VCANP13611 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC3.54□□□□□ -1.84
VCANP13611 RNU4-47P-201ENST00000410876 114 ntBASIC3.54□□□□□ -1.84
VCANP13611 SMC4P1-201ENST00000414479 527 ntBASIC3.54□□□□□ -1.84
VCANP13611 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.54□□□□□ -1.84
VCANP13611 OR5AW1P-201ENST00000426334 1006 ntBASIC3.54□□□□□ -1.84
VCANP13611 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VCANP13611 AL035458.1-201ENST00000433096 585 ntBASIC3.54□□□□□ -1.84
VCANP13611 ANXA2P1-201ENST00000505539 926 ntBASIC3.54□□□□□ -1.84
VCANP13611 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VCANP13611 AC026782.2-201ENST00000510845 636 ntBASIC3.54□□□□□ -1.84
VCANP13611 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.54□□□□□ -1.84
VCANP13611 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.54□□□□□ -1.84
VCANP13611 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC3.54□□□□□ -1.84
VCANP13611 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
VCANP13611 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC3.54□□□□□ -1.84
VCANP13611 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
VCANP13611 VTI1BP4-201ENST00000427516 527 ntBASIC3.54□□□□□ -1.84
VCANP13611 SKP1P3-201ENST00000429280 487 ntBASIC3.54□□□□□ -1.84
VCANP13611 WASF1P1-201ENST00000447560 1131 ntBASIC3.54□□□□□ -1.84
VCANP13611 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.54□□□□□ -1.84
VCANP13611 PSMA2P1-201ENST00000526365 646 ntBASIC3.54□□□□□ -1.84
VCANP13611 OR4C2P-201ENST00000530855 1064 ntBASIC3.54□□□□□ -1.84
VCANP13611 AC092184.1-201ENST00000625042 715 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms