Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC3.87□□□□□ -1.79
SHOX2O60902 AL049830.2-201ENST00000480072 201 ntBASIC3.87□□□□□ -1.79
SHOX2O60902 RPL23AP73-201ENST00000492507 471 ntBASIC3.87□□□□□ -1.79
SHOX2O60902 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC3.87□□□□□ -1.79
SHOX2O60902 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.87□□□□□ -1.79
SHOX2O60902 AC106806.2-201ENST00000509365 500 ntBASIC3.87□□□□□ -1.79
SHOX2O60902 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.87□□□□□ -1.79
SHOX2O60902 RNA5SP49-201ENST00000516450 115 ntBASIC3.87□□□□□ -1.79
SHOX2O60902 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.87□□□□□ -1.79
SHOX2O60902 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.87□□□□□ -1.79
SHOX2O60902 OR4C2P-201ENST00000530855 1064 ntBASIC3.87□□□□□ -1.79
SHOX2O60902 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.87□□□□□ -1.79
SHOX2O60902 TRAV8-5-201ENST00000537369 341 ntBASIC3.87□□□□□ -1.79
SHOX2O60902 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SHOX2O60902 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.87□□□□□ -1.79
SHOX2O60902 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.87□□□□□ -1.79
SHOX2O60902 AC084373.1-201ENST00000603311 235 ntBASIC3.87□□□□□ -1.79
SHOX2O60902 AL592436.1-201ENST00000605135 558 ntBASIC3.87□□□□□ -1.79
SHOX2O60902 AC245389.1-201ENST00000605141 529 ntBASIC3.87□□□□□ -1.79
SHOX2O60902 AC002044.3-201ENST00000623314 541 ntBASIC3.87□□□□□ -1.79
SHOX2O60902 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.87□□□□□ -1.79
SHOX2O60902 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.87□□□□□ -1.79
SHOX2O60902 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.87□□□□□ -1.79
SHOX2O60902 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
SHOX2O60902 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.87□□□□□ -1.79
SHOX2O60902 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SHOX2O60902 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SHOX2O60902 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
SHOX2O60902 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.87□□□□□ -1.79
SHOX2O60902 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.86□□□□□ -1.79
SHOX2O60902 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 AL158163.1-201ENST00000603915 1649 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 SNORA60-201ENST00000362396 134 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 RNA5SP399-201ENST00000364003 117 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 RNU6-761P-201ENST00000384148 107 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 MIR134-201ENST00000385258 73 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 RNA5SP31-201ENST00000411144 127 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.86□□□□□ -1.79
SHOX2O60902 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC3.86□□□□□ -1.79
SHOX2O60902 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 RPL7P53-201ENST00000421245 739 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 AL356387.2-201ENST00000422272 243 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 GTF2IP23-201ENST00000423746 351 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 AC011998.1-201ENST00000433403 117 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 UBE2V2P1-201ENST00000434717 398 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.86□□□□□ -1.79
SHOX2O60902 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.86□□□□□ -1.79
SHOX2O60902 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.86□□□□□ -1.79
SHOX2O60902 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.86□□□□□ -1.79
SHOX2O60902 RPS4XP2-201ENST00000458402 793 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 RN7SL330P-201ENST00000469709 307 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 METTL15P1-201ENST00000481421 1045 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.86□□□□□ -1.79
SHOX2O60902 PHBP14-201ENST00000512887 367 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC3.86□□□□□ -1.79
SHOX2O60902 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.86□□□□□ -1.79
SHOX2O60902 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 AC087369.1-201ENST00000520775 996 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.86□□□□□ -1.79
SHOX2O60902 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.86□□□□□ -1.79
SHOX2O60902 AC084757.1-201ENST00000559987 490 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.86□□□□□ -1.79
SHOX2O60902 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC3.86□□□□□ -1.79
SHOX2O60902 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
SHOX2O60902 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.86□□□□□ -1.79
SHOX2O60902 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.86□□□□□ -1.79
SHOX2O60902 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.86□□□□□ -1.79
SHOX2O60902 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.86□□□□□ -1.79
SHOX2O60902 AC016957.2-201ENST00000616998 848 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 RMST_5.1-201ENST00000618704 126 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 AC145207.9-201ENST00000623802 325 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 AL132640.2-201ENST00000559968 1698 ntBASIC3.86□□□□□ -1.79
SHOX2O60902 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SHOX2O60902 ZNF826P-207ENST00000622273 1910 ntBASIC3.85□□□□□ -1.79
SHOX2O60902 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.85□□□□□ -1.79
SHOX2O60902 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
SHOX2O60902 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SHOX2O60902 MIR30E-201ENST00000362104 92 ntBASIC3.85□□□□□ -1.79
SHOX2O60902 RNA5SP505-201ENST00000364748 108 ntBASIC3.85□□□□□ -1.79
SHOX2O60902 RNU6-304P-201ENST00000364855 107 ntBASIC3.85□□□□□ -1.79
SHOX2O60902 RNU6-328P-201ENST00000390887 106 ntBASIC3.85□□□□□ -1.79
SHOX2O60902 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.85□□□□□ -1.79
SHOX2O60902 RPL23AP1-201ENST00000428990 471 ntBASIC3.85□□□□□ -1.79
SHOX2O60902 HIGD1AP4-201ENST00000430194 280 ntBASIC3.85□□□□□ -1.79
SHOX2O60902 RPL12P28-201ENST00000430852 489 ntBASIC3.85□□□□□ -1.79
SHOX2O60902 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.85□□□□□ -1.79
SHOX2O60902 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3.85□□□□□ -1.79
SHOX2O60902 AL359073.1-201ENST00000448036 403 ntBASIC3.85□□□□□ -1.79
SHOX2O60902 CCRL1P1-201ENST00000449542 1053 ntBASIC3.85□□□□□ -1.79
SHOX2O60902 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC3.85□□□□□ -1.79
SHOX2O60902 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms