Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CASC19-204ENST00000641001 2055 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RNF6P1-201ENST00000444889 1784 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC100871.1-201ENST00000507871 1456 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 OR52B1P-201ENST00000316506 909 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RNU5E-10P-201ENST00000363506 118 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RNU1-63P-201ENST00000383902 164 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RNU1-13P-201ENST00000384499 162 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 MIR3065-201ENST00000390137 79 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 SNORD65C-201ENST00000390962 71 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 SNORA11F-201ENST00000408237 128 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RNA5SP317-201ENST00000410176 116 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RNA5SP311-201ENST00000411290 116 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC096533.1-201ENST00000411645 353 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 GSTM3P2-201ENST00000412746 530 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 LIPT1P1-201ENST00000415870 1186 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 MTND4P11-201ENST00000417020 1058 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 TCEA1P2-201ENST00000420496 906 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AL158073.1-201ENST00000426848 1104 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RPL21P91-201ENST00000429231 479 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC011242.1-201ENST00000433596 1158 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC092013.1-201ENST00000438795 332 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RPL23AP52-201ENST00000439311 478 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC092170.1-201ENST00000440211 356 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RPS4XP6-201ENST00000477670 797 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC108022.1-201ENST00000493466 478 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RN7SKP157-201ENST00000516174 282 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RNA5SP315-201ENST00000516340 116 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 RNA5SP312-201ENST00000517068 116 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC118942.1-201ENST00000529674 1035 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AP000919.1-202ENST00000581139 1264 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 VN1R87P-201ENST00000596706 487 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC079587.1-201ENST00000603846 277 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC099785.1-201ENST00000605697 437 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 SNORD91B-202ENST00000608459 222 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC022960.3-201ENST00000619794 441 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AL669942.2-201ENST00000620352 697 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 MIR492-201ENST00000638676 116 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AL158163.1-201ENST00000603915 1649 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 MTCO1P6-201ENST00000481192 1384 ntBASIC4.27□□□□□ -1.73
CCDC3Q9BQI4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC011155.1-201ENST00000316512 456 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 RNU6-549P-201ENST00000384433 107 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC025750.1-201ENST00000399891 379 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 RPS20P14-201ENST00000412545 360 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 VDAC1P9-201ENST00000412766 841 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AL139095.3-201ENST00000419672 1203 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 OR51B8P-201ENST00000449892 769 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 TPMTP4-201ENST00000450749 678 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC008280.2-201ENST00000455473 307 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC008565.1-201ENST00000509046 885 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms