Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 SNORD6-201ENST00000365444 73 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 MIR585-201ENST00000384887 94 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 SNORA3.3-201ENST00000408712 125 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 AC244033.1-201ENST00000426826 870 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 HNRNPDLP3-201ENST00000456745 380 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 AL136097.1-201ENST00000456945 913 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 AC022034.3-201ENST00000471393 478 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 AC111000.5-201ENST00000506559 1178 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 AC026784.1-201ENST00000507986 352 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 OR7E13P-201ENST00000526052 910 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 AC008011.1-201ENST00000545989 227 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 GMCL1P2-201ENST00000605230 823 ntBASIC3.96□□□□□ -1.78
CCDC42Q96M95 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
CCDC42Q96M95 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC42Q96M95 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 AL121657.1-201ENST00000327215 531 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 AL136116.1-201ENST00000403591 381 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 MTHFD2P2-201ENST00000407725 247 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC42Q96M95 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 AC092013.1-201ENST00000438795 332 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 OR9M1P-201ENST00000459641 921 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 PPIAP21-201ENST00000464473 501 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 RPL7P19-201ENST00000469948 618 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 AC006463.2-201ENST00000473326 348 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 SNORD116-26-201ENST00000516006 96 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 AC027281.1-201ENST00000574178 758 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 AL591034.3-201ENST00000605511 685 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 AL445423.1-201ENST00000609941 536 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 AC000123.2-201ENST00000623124 461 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 MIR7641-1-201ENST00000627518 61 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC42Q96M95 AC110792.3-201ENST00000595906 1614 ntBASIC3.95□□□□□ -1.78
CCDC42Q96M95 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC42Q96M95 PWAR6-201ENST00000552334 4618 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC42Q96M95 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC42Q96M95 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC42Q96M95 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC42Q96M95 RNA5SP42-201ENST00000364278 115 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 RNA5SP235-201ENST00000365411 114 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC42Q96M95 RNU6-213P-201ENST00000384051 104 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 SOD2P1-201ENST00000396543 562 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 MRPS18BP2-201ENST00000434310 759 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC074367.1-201ENST00000438685 1125 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 HMGB3P14-201ENST00000494195 599 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 FTH1P21-201ENST00000512179 511 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 RNU6-1231P-201ENST00000517185 103 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 C1GALT1P3-201ENST00000522049 819 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC42Q96M95 MIR4425-201ENST00000580572 84 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC005255.1-201ENST00000593748 216 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 AL592295.2-201ENST00000612578 206 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms