Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.36□□□□□ -1.71
HDDC3Q8N4P3 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC119744.1-201ENST00000454746 1715 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 MTND5P11-201ENST00000511037 1812 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC092435.4-201ENST00000623012 4159 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 PNPT1P2-201ENST00000456768 2050 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 RN7SKP44-201ENST00000363602 316 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP151-201ENST00000365632 117 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 MIR200C-201ENST00000384980 68 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AL161909.1-201ENST00000397390 712 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AL583835.1-201ENST00000399570 407 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 RNU6ATAC-201ENST00000408749 126 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP36-201ENST00000410197 133 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP239-201ENST00000410218 129 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP44-201ENST00000410446 133 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 VDAC1P9-201ENST00000412766 841 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 PRELID3BP11-201ENST00000414230 479 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC023128.2-201ENST00000420880 1223 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 PNRC2P1-201ENST00000423940 420 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC005189.1-201ENST00000431286 310 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 RPS26P40-201ENST00000435209 294 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AL512326.1-201ENST00000443050 721 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AL162151.2-201ENST00000448875 158 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 LINC00557-201ENST00000563184 1279 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC090312.2-201ENST00000582687 378 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC008739.3-201ENST00000603262 127 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 LLPHP1-201ENST00000603571 367 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC024220.1-201ENST00000603675 484 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC233280.2-201ENST00000603917 1070 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 MIR6864-201ENST00000617935 70 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 FP325313.1-201ENST00000638228 703 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 MTND4P21-201ENST00000453886 1357 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 HSPD1P14-201ENST00000432666 1618 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC007390.2-201ENST00000606229 3803 ntBASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
HDDC3Q8N4P3 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 RPL17P50-201ENST00000396131 546 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AL603766.1-201ENST00000407763 664 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 RN7SKP177-201ENST00000410567 355 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 RN7SKP159-201ENST00000410657 292 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 CYCSP19-201ENST00000411715 316 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AC108032.1-201ENST00000416706 207 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 RPL31P45-201ENST00000419532 356 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 RPS12P5-201ENST00000423449 371 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AL157831.1-201ENST00000426134 473 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 CDY14P-201ENST00000431260 1014 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 RPL37P1-201ENST00000432310 284 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 CDY12P-201ENST00000440679 1015 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 CDY13P-201ENST00000445813 1015 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 CDY23P-201ENST00000451661 1014 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 RN7SL691P-201ENST00000494487 301 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 RNA5SP519-201ENST00000516480 119 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 C1DP5-201ENST00000525775 383 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms