Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 RPL36AP53-201ENST00000432891 316 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC236972.2-201ENST00000434979 310 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC006335.2-201ENST00000437993 330 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC016691.1-201ENST00000441321 413 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 RPL31P15-201ENST00000449770 338 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 RPS27AP17-201ENST00000463344 455 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC021660.1-201ENST00000465006 554 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC108471.1-201ENST00000513977 287 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 RNA5SP473-201ENST00000516402 125 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 RNU6-714P-201ENST00000516963 103 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC087241.2-201ENST00000535801 324 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 HMGB1P6-201ENST00000569046 646 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC113139.1-201ENST00000605049 239 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 uc_338.26-201ENST00000612659 160 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 CDC27P2-201ENST00000425026 1922 ntBASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
UBE3DQ7Z6J8 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.71□□□□□ -1.49
UBE3DQ7Z6J8 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.49
UBE3DQ7Z6J8 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
UBE3DQ7Z6J8 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
UBE3DQ7Z6J8 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.49
UBE3DQ7Z6J8 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 MTND4P27-201ENST00000450813 1354 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 TCP11X1-202ENST00000622971 1372 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 Y_RNA.58-201ENST00000362807 102 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 Y_RNA.154-201ENST00000363624 102 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RNU1-59P-201ENST00000364829 162 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RNY3P1-201ENST00000365085 102 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RNY3-201ENST00000365484 102 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 Y_RNA.394-201ENST00000383942 103 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 Y_RNA.490-201ENST00000384413 102 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RPL23AP17-201ENST00000401064 499 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AL122016.1-201ENST00000403365 367 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 NME1P1-201ENST00000420914 382 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 NMD3P2-201ENST00000421815 761 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC022022.1-201ENST00000430304 178 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 MTCO3P21-201ENST00000430791 643 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC010881.1-201ENST00000433830 235 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AL606489.2-201ENST00000433886 234 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC007679.3-201ENST00000434035 414 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 MRPL50P4-201ENST00000446432 475 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AL035551.1-201ENST00000446931 348 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC118758.1-202ENST00000454719 225 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 MTCO3P2-201ENST00000457365 171 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 ACA64.4-201ENST00000459070 127 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RPL7P15-201ENST00000461190 712 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RN7SL269P-201ENST00000467795 305 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 TMEM251P1-201ENST00000503717 318 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 RNU6-202P-201ENST00000515998 96 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 OR5B19P-201ENST00000531766 928 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AL049779.3-201ENST00000557141 606 ntBASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.71□□□□□ -1.5
UBE3DQ7Z6J8 AC121334.2-201ENST00000605387 271 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 168.4 ms